PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca52327.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

SRS

Protein Properties

Length: 392aa MW: 43070.6 Da PI: 8.794

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca52327.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	22.9	2.3e-07	65	110	5	50
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrr 50 + +C CGn a+ C ++ C+ CC C+ hv + a r Dca52327.1 65 KPKCITCGNVARSRCPFQCCKSCCSKAQNPCHIHVLKQNSTLADRG 110 568*******************************965544444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.8E-5	67	117	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MAASPILSNN GSETTSGNAT PIPSPSPAAA PAVSTPTTVP AGGKSQASIL LQRSEPTKNL 60 RGLNKPKCIT CGNVARSRCP FQCCKSCCSK AQNPCHIHVL KQNSTLADRG ASTNSTPAEQ 120 QPSEAAPPVP SVKATSIRQL SNAFTQFNNV HLPLRSRKPL SLKEALVINE WRFAKLKEYK 180 ESNIEAENEA FDRYMRNIGL LEDVFDVNAE RLSEDTSPLS NLPTTSGEKS EMVSQIKAKL 240 RSNPVRIDAF RKRIRHTVDQ GLTNFQIYAS KDGSANLDIE GDPTPKAANK WWGGKTSAFT 300 ALNDKLNRAQ NEDDLKQCIQ MRSKIKGQTK STPPKKIESS EMSKEQMAPN DMVPTRESEK 360 PLLKFVRATE VDQDTLNGME FHFSSLEEIE DL

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MAASPILSNN GSETTSGNAT PIPSPSPAAA PAVSTPTTVP AGGKSQASIL LQRSEPTKNL  60
RGLNKPKCIT CGNVARSRCP FQCCKSCCSK AQNPCHIHVL KQNSTLADRG ASTNSTPAEQ  120
QPSEAAPPVP SVKATSIRQL SNAFTQFNNV HLPLRSRKPL SLKEALVINE WRFAKLKEYK  180
ESNIEAENEA FDRYMRNIGL LEDVFDVNAE RLSEDTSPLS NLPTTSGEKS EMVSQIKAKL  240
RSNPVRIDAF RKRIRHTVDQ GLTNFQIYAS KDGSANLDIE GDPTPKAANK WWGGKTSAFT  300
ALNDKLNRAQ NEDDLKQCIQ MRSKIKGQTK STPPKKIESS EMSKEQMAPN DMVPTRESEK  360
PLLKFVRATE VDQDTLNGME FHFSSLEEIE DL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010677206.1	1e-166	PREDICTED: uncharacterized protein LOC104892884 isoform X1
TrEMBL	A0A0J8CHZ3	1e-165	A0A0J8CHZ3_BETVU; Uncharacterized protein
STRING	XP_010677206.1	1e-166	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-81