PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca51355.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 608aa    MW: 66909.9 Da    PI: 5.9806
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca51355.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-07273293526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f++ G C+ Gd C +aHg
  Dca51355.1 273 PCPEFRK-GACPKGDVCEYAHG 293
                 8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.18E-1776187IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.88279188IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00379109IPR002110Ankyrin repeat
PfamPF127961.5E-1079148IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-1780188IPR020683Ankyrin repeat-containing domain
CDDcd002042.57E-1581156No hitNo description
SMARTSM002489.9E-4114146IPR002110Ankyrin repeat
PROSITE profilePS5008812.262114149IPR002110Ankyrin repeat
SMARTSM002484100150185IPR002110Ankyrin repeat
SMARTSM003566.6E-5268294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4272295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.183273295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-4301331IPR000571Zinc finger, CCCH-type
SMARTSM0035631303326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MCSGSNMETS STEVIMESDT KKNVSVSVGD QPLSVQLLEL SAVDDLSGFK RAVEEEGRDV  60
DEVGRWYGRR VGSKKMGFEE RNPLMIAAMF GSKDILRFIL QTGRVDVNKA SESDGATALH  120
CAASGGSLYS HEVIKLLVDS SADVNKVDAN GNRPIDVVSS CVGSSSRLKR KTLDTLLKKG  180
SNSDEQDVTE LEISSPKFLS DGNGLEKKEY PIDPSLPDIK NGIYGTDEFR MYTFKIKPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPEFRKG ACPKGDVCEY AHGIFECWLH  300
PAQYRTRLCK DETNCARRVC FFAHKPEELR PLYPSTGSAV PSPRSYSSSA PSFDMFMPSS  360
STPPMTPTGS LSPLGGATAW NINAPPALQL PGSRLKAALN ARDMDFKAEL HRQQLLAEFA  420
GLSMSPSARS NELGRLSGLQ PTNLDDMFGA HQPFRPSYSS GMPSSPVRSG SPFGIESCGS  480
PISSARLASF ANRSQSFIDR TNINRLSDWG SPDGKVEWAV QGDELNQLRK TASFGYRTNI  540
TPNLESGDEP DVSWVQSLVR DAPSTSSTKL SFEEQAEHHQ YYLNSSGTSE MIPPWVEQLY  600
MEQEPMAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021715545.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2I7ZAR70.0A0A2I7ZAR7_SESPO; Salt-inducible zinc finger 1
STRINGXP_010685536.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-180C3H family protein