PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca51355.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 608aa MW: 66909.9 Da PI: 5.9806 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.4 | 4.5e-07 | 273 | 293 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Dca51355.1 273 PCPEFRK-GACPKGDVCEYAHG 293 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.18E-17 | 76 | 187 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 18.882 | 79 | 188 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.003 | 79 | 109 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 1.5E-10 | 79 | 148 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.4E-17 | 80 | 188 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 2.57E-15 | 81 | 156 | No hit | No description |
SMART | SM00248 | 9.9E-4 | 114 | 146 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.262 | 114 | 149 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 4100 | 150 | 185 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 6.6E-5 | 268 | 294 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-4 | 272 | 295 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.183 | 273 | 295 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-4 | 301 | 331 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 31 | 303 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MCSGSNMETS STEVIMESDT KKNVSVSVGD QPLSVQLLEL SAVDDLSGFK RAVEEEGRDV 60 DEVGRWYGRR VGSKKMGFEE RNPLMIAAMF GSKDILRFIL QTGRVDVNKA SESDGATALH 120 CAASGGSLYS HEVIKLLVDS SADVNKVDAN GNRPIDVVSS CVGSSSRLKR KTLDTLLKKG 180 SNSDEQDVTE LEISSPKFLS DGNGLEKKEY PIDPSLPDIK NGIYGTDEFR MYTFKIKPCS 240 RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPEFRKG ACPKGDVCEY AHGIFECWLH 300 PAQYRTRLCK DETNCARRVC FFAHKPEELR PLYPSTGSAV PSPRSYSSSA PSFDMFMPSS 360 STPPMTPTGS LSPLGGATAW NINAPPALQL PGSRLKAALN ARDMDFKAEL HRQQLLAEFA 420 GLSMSPSARS NELGRLSGLQ PTNLDDMFGA HQPFRPSYSS GMPSSPVRSG SPFGIESCGS 480 PISSARLASF ANRSQSFIDR TNINRLSDWG SPDGKVEWAV QGDELNQLRK TASFGYRTNI 540 TPNLESGDEP DVSWVQSLVR DAPSTSSTKL SFEEQAEHHQ YYLNSSGTSE MIPPWVEQLY 600 MEQEPMAA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021715545.1 | 0.0 | zinc finger CCCH domain-containing protein 66-like | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A2I7ZAR7 | 0.0 | A0A2I7ZAR7_SESPO; Salt-inducible zinc finger 1 | ||||
STRING | XP_010685536.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-180 | C3H family protein |