PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca51086.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 547aa    MW: 61358.7 Da    PI: 7.1715
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca51086.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.1e-11446487446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      W ++E+ ll++++ ++G  +W+ +a+++g ++t  +c++++++
       Dca51086.1 446 WNADEEILLLEGIGMYGLSNWAEVAEHVG-TKTKSECIDHYNS 487
                      *****************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002919.1E-9382427IPR000433Zinc finger, ZZ-type
SuperFamilySSF578507.53E-15384449No hitNo description
PfamPF005697.5E-9384420IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.677386429IPR000433Zinc finger, ZZ-type
CDDcd023352.81E-25386434No hitNo description
PROSITE patternPS013570388415IPR000433Zinc finger, ZZ-type
SuperFamilySSF466893.96E-12439492IPR009057Homeodomain-like
PROSITE profilePS5129320.853441493IPR017884SANT domain
SMARTSM007171.6E-10442491IPR001005SANT/Myb domain
PfamPF002498.1E-11445487IPR001005SANT/Myb domain
CDDcd001673.93E-11446488No hitNo description
Gene3DG3DSA:1.10.10.603.4E-8446488IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MDKNDALRPK PWTIPRRFRN KVHRRFETAE EFSPISVLGV KQVPRSADVD RVLDYFRLDE  60
GNQPRYWLPQ AEVIFTDEFL CRVGLIPALD PELTAADYER IGLDSEKNPI LARPTADTND  120
RKEVLRTVME NFVPKPPSMS ASSIPKRKTI SSKKPKEAKK QKTEKSGGHP QPKMERSTKD  180
QPMPSPQRSH TPQHHFVDLE DEFEESSRPA SSVGPVSQPQ PQPRPLDKGK VSSDPFSEGF  240
LSGCHVLDVQ ADSVSSIPNF GEMDLNSFFC LQKAAGQDQK KVTIAVGTPG MGAGDKFQTP  300
ANVFRGQLNK LNSGLRIVMR QLELVEHGAD LLIKSADRAD ATQSSLCRSC EEGRAAVSKL  360
EKELGQVKTD YILLRQSSHD EKKALYHCNY CNKDISGMIR IKCVTCPDFD LCIECFSVGA  420
EVYPHKSNHP YRVMDNLSFP LICPDWNADE EILLLEGIGM YGLSNWAEVA EHVGTKTKSE  480
CIDHYNSVYM NSPCFPLPDM SHVVGKNREE LQAMAMERNE LQKWSGSGSR KGHILLVYGG  540
IERLTRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E2e-353865015120Transcriptional adapter 2
6cw3_G2e-353865015120Transcriptional adapter 2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146160RKTISSKKPKEAKKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-