PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca50832.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 397aa MW: 42562.4 Da PI: 5.9767

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca50832.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	212	254	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L Dca50832.1 212 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 254 79*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.866	205	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.02E-17	208	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-14	211	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-9	211	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.90E-13	212	259	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.5E-16	212	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MLSGQNGVVS WVVDDADQDD AVSYHHHHHQ QQQQLPSVVP PLLPAVDSHD WYLSAAVNHH 60 HHNNPLSLLP PPPPHHNSLS LYQTTSSSTF SPFDPFSAFD LGPGPVGGAG FVGPEMWDVL 120 GKRKRDGGVE EYDSDDGNDE FGGGSEYNNN SFYNNNNGGG GGGGGSEGFE KGEGDYSNSN 180 ANSGVTGGGG GGGGGGGGEK GKRKGMPAKN LMAERRRRKK LNDRLYMLRS VVPKISKMDR 240 ASILGDAIDY LKELLQRISD LHNELESTNP GSLMPSSSSS HPSTPMPSST LPCRVKQELS 300 PTSLPVPNNQ PVRIEVKARE GRAVNIHMFC TRRPGLLLST VSALDNLGLD IQQAVISCFN 360 GFALDIFLAE QCREGLEMLP EQIKAVLLDS VGFLGVM

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MLSGQNGVVS WVVDDADQDD AVSYHHHHHQ QQQQLPSVVP PLLPAVDSHD WYLSAAVNHH  60
HHNNPLSLLP PPPPHHNSLS LYQTTSSSTF SPFDPFSAFD LGPGPVGGAG FVGPEMWDVL  120
GKRKRDGGVE EYDSDDGNDE FGGGSEYNNN SFYNNNNGGG GGGGGSEGFE KGEGDYSNSN  180
ANSGVTGGGG GGGGGGGGEK GKRKGMPAKN LMAERRRRKK LNDRLYMLRS VVPKISKMDR  240
ASILGDAIDY LKELLQRISD LHNELESTNP GSLMPSSSSS HPSTPMPSST LPCRVKQELS  300
PTSLPVPNNQ PVRIEVKARE GRAVNIHMFC TRRPGLLLST VSALDNLGLD IQQAVISCFN  360
GFALDIFLAE QCREGLEMLP EQIKAVLLDS VGFLGVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	219	KRKGMPAKNLMAERRRRKK
2	213	220	ERRRRKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022741193.1	1e-114	transcription factor ICE1-like isoform X2
TrEMBL	A0A2N9J4R6	1e-109	A0A2N9J4R6_FAGSY; Uncharacterized protein
TrEMBL	A0A2Z6NND3	1e-110	A0A2Z6NND3_TRISU; Uncharacterized protein
STRING	XP_010096038.1	1e-108	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.4	6e-94	bHLH family protein