PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca50392.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 326aa    MW: 37595.7 Da    PI: 5.127
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca50392.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++++ +G g+W+++++  g+ R++k+c++rw +yl
       Dca50392.1 14 KGLWSPEEDEKLFNYITHFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding46.87e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eE+ l+++++++lG++ W+ Ia+ ++ gRt++++k+ w++
       Dca50392.1  67 RGMFSQEEENLIINLHHLLGNR-WAQIAAQLP-GRTDNEIKNLWNS 110
                      788*******************.*********.*********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129424.484965IPR017930Myb domain
SuperFamilySSF466898.99E-2912108IPR009057Homeodomain-like
SMARTSM007176.2E-121363IPR001005SANT/Myb domain
PfamPF002493.8E-141461IPR001005SANT/Myb domain
CDDcd001671.69E-91761No hitNo description
Gene3DG3DSA:1.10.10.604.4E-2565117IPR009057Homeodomain-like
PROSITE profilePS5129419.18166116IPR017930Myb domain
SMARTSM007172.3E-1266114IPR001005SANT/Myb domain
PfamPF002496.0E-1467110IPR001005SANT/Myb domain
CDDcd001674.82E-970112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGRQNCCAKQ KLRKGLWSPE EDEKLFNYIT HFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQEEENLIIN LHHLLGNRWA QIAAQLPGRT DNEIKNLWNS SLKKKLIKQG  120
IDPQTHEPLE TQLQSNNSDN KDKDRTFQSS FDDQNISLTT TTTTTKPVKS ENQPYYPPYI  180
TAENTTTFLN PFADAYQGLV PSEFDRHQMN VTELLQSQQS YILSSLDDTS FSESLMFSEG  240
KECSSSSGSN NNNNIMNNIS RNTSFSWENV ENKNLESEFF QYPFEINNSY GLIKTEQSQE  300
HQPESWEEEQ IKSLSLSEEL TAPRCW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733554.13e-98transcription factor MYB86-like
TrEMBLA0A0K9RHI81e-87A0A0K9RHI8_SPIOL; Uncharacterized protein
STRINGXP_010678849.19e-91(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.17e-59myb domain protein 86