PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca50376.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 491aa    MW: 55195.9 Da    PI: 5.875
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca50376.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-17212258148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd ll+++v+++G + W+ Ia++++ gR +kqc++rw+++l
       Dca50376.1 212 KGQWTIEEDRLLIQLVERYGIRKWSQIAQMLN-GRIGKQCRERWHNHL 258
                      799*****************************.*************97 PP
2Myb_DNA-binding55.99.8e-18264306145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd +l++a+++ G++ W+ Ia++++ gRt++++k++w+
       Dca50376.1 264 KDVWSEEEDMILIKAHAEIGNK-WAEIAKKLP-GRTENSIKNHWN 306
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.593207262IPR017930Myb domain
SuperFamilySSF466896.47E-32209305IPR009057Homeodomain-like
SMARTSM007172.8E-15211260IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-27213265IPR009057Homeodomain-like
PfamPF139219.1E-19215272No hitNo description
CDDcd001675.03E-15215258No hitNo description
PROSITE profilePS5129421.7263313IPR017930Myb domain
SMARTSM007172.6E-17263311IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-22266313IPR009057Homeodomain-like
CDDcd001671.82E-13267309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDFDAKLPSQ IPFFLQDNYS SKSRDDPFSL DGAFSSKGST NNNNHNFIQE FHPLEGFNLN  60
ASPSNNNHPI YSLQTGCFYP FDNNNNNSVS NSLSNNLDFY ESKPYGSHAP SNHGALAPLM  120
DYNLSHQGGG GGGLGYSHQM MVTPIHMVSP SGHANYHPIS YRDFGLLKSC KAPDEGSCSS  180
PQTDINLVAK SLSETLVRKG GRGRKKNTNV VKGQWTIEED RLLIQLVERY GIRKWSQIAQ  240
MLNGRIGKQC RERWHNHLRP DIKKDVWSEE EDMILIKAHA EIGNKWAEIA KKLPGRTENS  300
IKNHWNATKR RQLSTRKCRS KYPRQSSLLQ DYIKSLAPET INAGCRKKKP PSSSSTKNNT  360
TTNNNPNNPN YNTNVVIGEE KKNNGFKNKV SSIDLIGSSD SSSSYRLEPE FEFSDVPDFN  420
FDAQMFEESS IDSLLDCVPN NEEGGVVVGC DCNDATPYYD DVDDDDDDEE EEEFHGKKEL  480
DLVEMINQVN L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-452103132105C-Myb DNA-Binding Domain
1msf_C1e-452103132105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678927.11e-167PREDICTED: transcription factor MYB98
STRINGXP_010678927.11e-167(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-73myb domain protein 98