PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca50295.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | SRS | ||||||||
Protein Properties | Length: 238aa MW: 24566.9 Da PI: 8.5798 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 205 | 2e-63 | 21 | 181 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaeskkel 100 gta+CqdCGnq+kkdC h+RCRtCC+srgfdC+thvkstW+paa+rrerq+ + ++ ++ +++ +k++r +s+++s +s+++++ ++++ Dca50295.1 21 GTATCQDCGNQSKKDCIHQRCRTCCRSRGFDCSTHVKSTWIPAARRRERQAITGTSGGGGGGASsgSTSGAKKPRLVSSQTSSHTSTSNTP----PRSF 115 789***********************************************99998877665555336666677776644444333333333....3344 PP DUF702 101 etss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ss lP +v+++avf+cv+v++v+dge+e+aYq++v+i+Gh+fkG+LydqG+e+ Dca50295.1 116 DASSshhhqdgsyketLPGQVRAPAVFKCVKVTAVEDGEDEFAYQAVVKINGHLFKGFLYDQGVES 181 4444445578899999***********************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.1E-59 | 22 | 180 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.0E-26 | 24 | 66 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.4E-28 | 132 | 179 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGKNKSIDFE LPTSSGMTVL GTATCQDCGN QSKKDCIHQR CRTCCRSRGF DCSTHVKSTW 60 IPAARRRERQ AITGTSGGGG GGASSGSTSG AKKPRLVSSQ TSSHTSTSNT PPRSFDASSS 120 HHHQDGSYKE TLPGQVRAPA VFKCVKVTAV EDGEDEFAYQ AVVKINGHLF KGFLYDQGVE 180 SSRDGFPNLS ELHLGGSSGG GGSGGGRHGP LLDTSDVYGA SGGGGGLIGG SSYGNTIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022007727.1 | 7e-97 | protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 7e-75 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A251SHL8 | 7e-97 | A0A251SHL8_HELAN; Putative lateral root primordium protein | ||||
STRING | XP_008363042.1 | 5e-92 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 2e-64 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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