PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca49981.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

CPP

Protein Properties

Length: 598aa MW: 64626.9 Da PI: 6.5062

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca49981.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.5	2.1e-16	205	244	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Dca49981.1 205 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCVDCKNFE 244 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	16.953	205	245	IPR005172	CRC domain
SMART	SM01114	3.4E-20	205	246	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	7.2E-13	208	243	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MEEREKGAKS PPSSSAATAD VPAKKLARQL DFTAVFGGAR AVTPVSTAVV QKLATSASHV 60 PPQLPVTLPP QPRQPDMSPA QPPVTAVMSE PPIQPVVRPL CIAFDFFFGA LFDCDTFEFI 120 GNQTLLEDGH GPTLIPKIVP PRDKNNVIAN IHDVLSYTVS ASHLEYIVMD ATVIIAVTTL 180 RMRLLEEKLL KLPWNEEAGE LIVGKHNKGC HCKKSGCLKK YCECFQANIL CSENCKCVDC 240 KNFEGSEERQ AIFHGDHGNN LTYEQQAANA AITGAIGSSG FTPPNGGRKR KGHELFFGPS 300 SKDPLVSRGG QFHPANHIRP SGPSIVSSSP SARAANSVSL GASKFTYRSL LADIIQPQDV 360 KELCSVLVVL SEEAAKTIAE TRNVHEKRTE DGPETASTSL SQDRLPKDGV DVKSAAGDLR 420 GGNGTDNIGP DDYTVDGNDI SSSRPMSPLT LALRCDEQDV YMSSDSPDEA TNNVHTSPQL 480 PEQSVTDVDV YAEQERIVLT KFRDCLNRLI TYGELKETKC SSLARCDFIS HQAIGNGAAK 540 PRTDGFSKQE PLYNGAFKPV APAPNRFPTM TTTTTVPTNN INPRNQPPTR KDDLKPGL

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MEEREKGAKS PPSSSAATAD VPAKKLARQL DFTAVFGGAR AVTPVSTAVV QKLATSASHV  60
PPQLPVTLPP QPRQPDMSPA QPPVTAVMSE PPIQPVVRPL CIAFDFFFGA LFDCDTFEFI  120
GNQTLLEDGH GPTLIPKIVP PRDKNNVIAN IHDVLSYTVS ASHLEYIVMD ATVIIAVTTL  180
RMRLLEEKLL KLPWNEEAGE LIVGKHNKGC HCKKSGCLKK YCECFQANIL CSENCKCVDC  240
KNFEGSEERQ AIFHGDHGNN LTYEQQAANA AITGAIGSSG FTPPNGGRKR KGHELFFGPS  300
SKDPLVSRGG QFHPANHIRP SGPSIVSSSP SARAANSVSL GASKFTYRSL LADIIQPQDV  360
KELCSVLVVL SEEAAKTIAE TRNVHEKRTE DGPETASTSL SQDRLPKDGV DVKSAAGDLR  420
GGNGTDNIGP DDYTVDGNDI SSSRPMSPLT LALRCDEQDV YMSSDSPDEA TNNVHTSPQL  480
PEQSVTDVDV YAEQERIVLT KFRDCLNRLI TYGELKETKC SSLARCDFIS HQAIGNGAAK  540
PRTDGFSKQE PLYNGAFKPV APAPNRFPTM TTTTTVPTNN INPRNQPPTR KDDLKPGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-17	205	254	83	132	Protein lin-54 homolog
5fd3_B	1e-17	205	254	83	132	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021862324.1	0.0	protein tesmin/TSO1-like CXC 5
Swissprot	Q9SZD1	1e-113	TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBL	A0A0K9QRU4	0.0	A0A0K9QRU4_SPIOL; Uncharacterized protein
STRING	XP_010688245.1	1e-176	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-110	Tesmin/TSO1-like CXC domain-containing protein