PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca4990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 549aa MW: 61085.2 Da PI: 6.0323 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.7 | 1.3e-10 | 112 | 134 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f+ +tGtCk+G++C+++H+p Dca4990.1 112 DCSFYVKTGTCKFGPNCRYNHPP 134 7********************96 PP | |||||||
2 | zf-CCCH | 29 | 1.8e-09 | 157 | 177 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f+ G CkyGd C+++H+ Dca4990.1 157 CKYFQTPGGCKYGDACRYIHS 177 ********************8 PP | |||||||
3 | zf-CCCH | 31.7 | 2.6e-10 | 201 | 223 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C f++r+G C yG++C+F+H++ Dca4990.1 201 ECTFYLRNGSCGYGANCRFNHPE 223 7********************96 PP | |||||||
4 | zf-CCCH | 30.2 | 7.6e-10 | 345 | 370 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++f++tG Cky + C F+H+ Dca4990.1 345 PGQPDCDYFMKTGNCKYRSACIFNHP 370 5789*********************8 PP | |||||||
5 | zf-CCCH | 26.4 | 1.2e-08 | 437 | 461 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+Ck+ ++Ck++H++ Dca4990.1 437 QPECEYYMKTGQCKFKSSCKYHHPR 461 799********************96 PP | |||||||
6 | zf-CCCH | 28.7 | 2.2e-09 | 484 | 506 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr++ + G CkyG +C F+H+ Dca4990.1 484 KLCRNYEQQGMCKYGRNCLFNHP 506 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.887 | 107 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 107 | 134 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-5 | 111 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-8 | 112 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 113 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.68 | 151 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0087 | 152 | 178 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.09E-5 | 156 | 180 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-6 | 157 | 178 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-7 | 157 | 177 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.305 | 196 | 224 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-6 | 196 | 223 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.03E-5 | 198 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-8 | 201 | 223 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 202 | 222 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-5 | 344 | 371 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.887 | 344 | 372 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-6 | 346 | 370 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-5 | 349 | 373 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.001 | 434 | 461 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 434 | 462 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-6 | 437 | 461 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 438 | 462 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-6 | 480 | 507 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.577 | 480 | 508 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 482 | 508 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.5E-7 | 484 | 506 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.1E-6 | 484 | 506 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MGTWEEESSA LFESQNEIHS SGGTHHDDES ATDFGGNVEV KYVAVVNDDD DVVNGDDGEV 60 SDEVVQQFAR VEIHDNGSHD SKIDDEKRDD ECVLGGEESN YEVYPLRPYA TDCSFYVKTG 120 TCKFGPNCRY NHPPKRGVQD GTEENYESIG DAGKIQCKYF QTPGGCKYGD ACRYIHSTQK 180 TEEERVELNF TGLPIRPSAQ ECTFYLRNGS CGYGANCRFN HPEFSSTKEY EPQNSVPSSN 240 SAGGGVGLPR NYAGEPLQPF TRVSHGTQDL SNGLNPRNVS PYPLEMSFYP PMRPNPGWNQ 300 NQVYGGFSVN KTPVPHHAVF NYLNSVNPST HYENSTQIEE FPERPGQPDC DYFMKTGNCK 360 YRSACIFNHP IGRVSKLPLP PPVSSKGLFS RPAFMLPADG SQHPRSNSNN IRKNGMPSAQ 420 QMQPRMQNGE YPERAGQPEC EYYMKTGQCK FKSSCKYHHP RSRVPSSLQC AISQKGLPLR 480 PGAKLCRNYE QQGMCKYGRN CLFNHPDDVS PNIPAATQFH SSTKASVPTN SEPQVATNVN 540 SAWDDGWGI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021742280.1 | 1e-171 | zinc finger CCCH domain-containing protein 43-like | ||||
TrEMBL | A0A0K9QFH9 | 1e-167 | A0A0K9QFH9_SPIOL; Uncharacterized protein | ||||
STRING | XP_010674845.1 | 1e-167 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 3e-57 | C3H family protein |