PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca4990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 549aa    MW: 61085.2 Da    PI: 6.0323
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca4990.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-10112134527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 C+f+ +tGtCk+G++C+++H+p
  Dca4990.1 112 DCSFYVKTGTCKFGPNCRYNHPP 134
                7********************96 PP

2zf-CCCH291.8e-09157177626
                -SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                C++f+  G CkyGd C+++H+
  Dca4990.1 157 CKYFQTPGGCKYGDACRYIHS 177
                ********************8 PP

3zf-CCCH31.72.6e-10201223527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                +C f++r+G C yG++C+F+H++
  Dca4990.1 201 ECTFYLRNGSCGYGANCRFNHPE 223
                7********************96 PP

4zf-CCCH30.27.6e-10345370126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ++++ C++f++tG Cky + C F+H+
  Dca4990.1 345 PGQPDCDYFMKTGNCKYRSACIFNHP 370
                5789*********************8 PP

5zf-CCCH26.41.2e-08437461327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C ++++tG+Ck+ ++Ck++H++
  Dca4990.1 437 QPECEYYMKTGQCKFKSSCKYHHPR 461
                799********************96 PP

6zf-CCCH28.72.2e-09484506426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                +lCr++ + G CkyG +C F+H+
  Dca4990.1 484 KLCRNYEQQGMCKYGRNCLFNHP 506
                79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.887107135IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-5111134IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8112134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4113132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68151179IPR000571Zinc finger, CCCH-type
SMARTSM003560.0087152178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5156180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-6157178IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-7157177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.305196224IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-6196223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5198223IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-8201223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4202222IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-5344371IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.887344372IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-6346370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-5349373IPR000571Zinc finger, CCCH-type
SMARTSM003560.001434461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023434462IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6437461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5438462IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-6480507IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577480508IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6482508IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-7484506IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-6484506IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MGTWEEESSA LFESQNEIHS SGGTHHDDES ATDFGGNVEV KYVAVVNDDD DVVNGDDGEV  60
SDEVVQQFAR VEIHDNGSHD SKIDDEKRDD ECVLGGEESN YEVYPLRPYA TDCSFYVKTG  120
TCKFGPNCRY NHPPKRGVQD GTEENYESIG DAGKIQCKYF QTPGGCKYGD ACRYIHSTQK  180
TEEERVELNF TGLPIRPSAQ ECTFYLRNGS CGYGANCRFN HPEFSSTKEY EPQNSVPSSN  240
SAGGGVGLPR NYAGEPLQPF TRVSHGTQDL SNGLNPRNVS PYPLEMSFYP PMRPNPGWNQ  300
NQVYGGFSVN KTPVPHHAVF NYLNSVNPST HYENSTQIEE FPERPGQPDC DYFMKTGNCK  360
YRSACIFNHP IGRVSKLPLP PPVSSKGLFS RPAFMLPADG SQHPRSNSNN IRKNGMPSAQ  420
QMQPRMQNGE YPERAGQPEC EYYMKTGQCK FKSSCKYHHP RSRVPSSLQC AISQKGLPLR  480
PGAKLCRNYE QQGMCKYGRN CLFNHPDDVS PNIPAATQFH SSTKASVPTN SEPQVATNVN  540
SAWDDGWGI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021742280.11e-171zinc finger CCCH domain-containing protein 43-like
TrEMBLA0A0K9QFH91e-167A0A0K9QFH9_SPIOL; Uncharacterized protein
STRINGXP_010674845.11e-167(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.13e-57C3H family protein