PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca49764.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CO-like
Protein Properties Length: 422aa    MW: 45901.4 Da    PI: 6.0598
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca49764.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.8e-06444539
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                +C+ + e++   +C+++  +lC +C  + H+       H++
  Dca49764.1  4 MCDFCAEERSVVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                6*****************************65667777765 PP
2zf-B_box26.81.1e-084690442
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                 +C+++++++++  C + ++ lC++C + +H g      H+++++
  Dca49764.1 46 LVCERCNSQPASVRCIEERVSLCPNCNMLGHDGgstptfHKTENI 90
                68*****************************87999999999875 PP
3CCT61.92e-21339381143
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                 R +a++RYkeK+k+RkFeK++rYesRKa+A+ R+RvKGrFvk+
  Dca49764.1 339 RSEAVMRYKEKKKSRKFEKRVRYESRKARADVRKRVKGRFVKA 381
                 89***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.485147IPR000315B-box-type zinc finger
SMARTSM003365.9E-7447IPR000315B-box-type zinc finger
CDDcd000212.70E-8447No hitNo description
PROSITE profilePS501198.9444390IPR000315B-box-type zinc finger
CDDcd000210.005954776No hitNo description
PfamPF062031.1E-16339381IPR010402CCT domain
PROSITE profilePS5101715.487339381IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MGYMCDFCAE ERSVVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNSQPASVRC  60
IEERVSLCPN CNMLGHDGGS TPTFHKTENI SYYSGCPSSA ELSTIWSFFA DISLNASDNS  120
SSQQGVDSIR TVDGGKGNCV NAAAKDGPNF VKSSGIVGHS STPELGLRES ANQPQRPEFC  180
NHASTIPGID EDNLFEDFDM DEVDINFENY EELFGVTLTH SEKLLENGGI NSLFARQGML  240
RADSNVRAGL SVEASSMGVT NTVQPACSNA ASGDSVMSIK TEPNVALGAR QAHSGVSFSG  300
LTGESSGGDY QDCGASSMLL LGEPPWCPPC PEGSFQASRS EAVMRYKEKK KSRKFEKRVR  360
YESRKARADV RKRVKGRFVK AGNRFESCFI VTLYDMVVLQ ELLSDLTILY SFKAASGIPH  420
IY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021745942.11e-179zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_021745943.11e-179zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA91e-126COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A061DL861e-163A0A061DL86_THECC; B-box type zinc finger protein with CCT domain isoform 1
STRINGEOX935731e-164(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-97B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]