PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca49763.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | DBB | ||||||||
Protein Properties | Length: 167aa MW: 17817.8 Da PI: 6.321 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.8 | 8.1e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ + e++ +C+++ +lC +C + H+ H++ Dca49763.1 4 MCDFCAEERSVVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 6*****************************65677777766 PP | |||||||
2 | zf-B_box | 28.9 | 2.4e-09 | 46 | 90 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+++++++++ C + ++ lC++C + +H g H+++++ Dca49763.1 46 LVCERCNSQPASVRCIEERVSLCPNCNMLGHDGgstptfHKTENI 90 68*****************************87999999999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.485 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.9E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.50E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.944 | 43 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.7E-5 | 46 | 89 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MGYMCDFCAE ERSVVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNSQPASVRC 60 IEERVSLCPN CNMLGHDGGS TPTFHKTENI SYYSGCPSSA ELSTIWSFFA DISLNASDNS 120 SSQQGVDSIR TVDGGKGNCV NAAAKDGPNF VKSSGIVGHS STPELGL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865623.1 | 5e-62 | zinc finger protein CONSTANS-LIKE 10 | ||||
Swissprot | Q9LUA9 | 2e-62 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A0K9QBF5 | 7e-61 | A0A0K9QBF5_SPIOL; Uncharacterized protein | ||||
TrEMBL | D7MLL3 | 1e-60 | D7MLL3_ARALL; Zinc finger (B-box type) family protein | ||||
STRING | scaffold_801118.1 | 2e-61 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 8e-65 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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