PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca4973.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

CPP

Protein Properties

Length: 456aa MW: 49300.6 Da PI: 6.8555

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca4973.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.1	2.6e-16	323	362	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCkkskClk+YCeCfaag +C ++C+C+dC+Nk + Dca4973.1 323 SCKHCNCKKSKCLKLYCECFAAGIYCVQNCNCQDCFNKPS 362 689**********************************986 PP
2	TCR	48.9	1.3e-15	408	446	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+gC+Ckks C+kkYCeCf+ g+ Cs +C+Ce+CkN+ Dca4973.1 408 SKRGCQCKKSGCVKKYCECFQVGVGCSLSCRCESCKNTF 446 689**********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.2E-17	322	363	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	33.983	323	447	IPR005172	CRC domain
Pfam	PF03638	5.0E-12	325	360	IPR005172	CRC domain
SMART	SM01114	5.1E-15	407	448	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.1E-11	409	445	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MKRGCANLQS DVGSSGSMKP DCGFDVSGTD VLPSKVIEGD SMEVVPPPEN RTDMEIPERE 60 HIKEGCEEKT LICDVSNIFN SNSPTKGSHH ERQHERNVDS GIPSLITEVI QNPNGPYSEP 120 PLKASEIHKE AVDIHETNQL PDGKADGVLA EEAIHFAKTD SDGKLSTQKQ QNTNIGCLVN 180 EMSGSHYRQL LSNPSGCSPI SNSSTSFKTI KKCLVANKPG HSKSLSLFPD IGLHLNAVAT 240 AGGDKLIGTK SSVTCESNLL SSPCTSPSSN PSDGLERDCE VRKDDAPQTG NICEKSTFGE 300 CGISQSFLEN KRIKTECVGE TDSCKHCNCK KSKCLKLYCE CFAAGIYCVQ NCNCQDCFNK 360 PSHVDTVIAT RRLIESRNPL AFAPKVIVCS DTPSNANTIN MTAVSARSKR GCQCKKSGCV 420 KKYCECFQVG VGCSLSCRCE SCKNTFGRKE GQLLFE

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MKRGCANLQS DVGSSGSMKP DCGFDVSGTD VLPSKVIEGD SMEVVPPPEN RTDMEIPERE  60
HIKEGCEEKT LICDVSNIFN SNSPTKGSHH ERQHERNVDS GIPSLITEVI QNPNGPYSEP  120
PLKASEIHKE AVDIHETNQL PDGKADGVLA EEAIHFAKTD SDGKLSTQKQ QNTNIGCLVN  180
EMSGSHYRQL LSNPSGCSPI SNSSTSFKTI KKCLVANKPG HSKSLSLFPD IGLHLNAVAT  240
AGGDKLIGTK SSVTCESNLL SSPCTSPSSN PSDGLERDCE VRKDDAPQTG NICEKSTFGE  300
CGISQSFLEN KRIKTECVGE TDSCKHCNCK KSKCLKLYCE CFAAGIYCVQ NCNCQDCFNK  360
PSHVDTVIAT RRLIESRNPL AFAPKVIVCS DTPSNANTIN MTAVSARSKR GCQCKKSGCV  420
KKYCECFQVG VGCSLSCRCE SCKNTFGRKE GQLLFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-13	325	444	12	120	Protein lin-54 homolog
5fd3_B	2e-13	325	444	12	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9LUI3	2e-64	TSO1_ARATH; CRC domain-containing protein TSO1
STRING	XP_010675092.1	1e-123	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	5e-48	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]