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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Dca49550.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 245aa MW: 27015.9 Da PI: 7.9463 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 20.9 | 6.6e-07 | 2 | 33 | 20 | 55 |
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55
f+ L++l+P++ p K++K++ + +Av YIk Lq
Dca49550.1 2 FSDLQSLIPQL---P-HKVDKITLVDEAVSYIKTLQ 33
899*******6...3.89*****************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 10.76 | 1 | 32 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.47E-6 | 1 | 33 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 6.6E-8 | 2 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 4.97E-8 | 2 | 43 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 245 aa Download sequence Send to blast |
MFSDLQSLIP QLPHKVDKIT LVDEAVSYIK TLQSTFETLQ KQKLDRLNLT RNVPYVVDNN 60 NNNGNNNNNN NDNSGVMAKR SMNNNKGNNN NNDNSGVMAK GSMNNNNNNN NNNNNNNNNN 120 NNNNNSGVMA KDSLNLAASS SQNAPTIKTL TSPNVVLNTF GNNEAQFTVY AVKKPQLFTA 180 LCSILKKHHL DVVGSIISSG VDRCFYTILA RVNEEKFDLL NNDGEFTLEN ICKNAANEMI 240 LCVTA |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G49770.1 | 7e-12 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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