PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca49319.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | NF-YC | ||||||||
Protein Properties | Length: 218aa MW: 24495.2 Da PI: 8.7695 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 38.6 | 2.3e-12 | 120 | 200 | 19 | 99 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++P ari +i+k+d +i+aea l+ ka e f+ ++ ++ a e +++ + +a++v++ ++fdfl d vp++ Dca49319.1 120 CAFPTARITRIVKSDGFDCKITAEAVFLINKATEKFVELFSEDAYSYAAEERKSFVGYKHLASVVSEGKMFDFLSDFVPEK 200 579*************999******************99999************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.3E-20 | 122 | 199 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.1E-13 | 122 | 184 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.84E-15 | 132 | 200 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MMQPQVVLGL ATAKAEKMTG KIKFQKTFSM KKTTNSSSAV AVAGVSKPLK ITFKCRPQQQ 60 QDEEEIEDDE VLRTVKEKKK KKRKGEDENV EDLKKKKAKD ETKAKKKLDE EEGLGLDLEC 120 AFPTARITRI VKSDGFDCKI TAEAVFLINK ATEKFVELFS EDAYSYAAEE RKSFVGYKHL 180 ASVVSEGKMF DFLSDFVPEK ITAEKALAER NPPETLPA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 83 | KKKKKRK |
2 | 77 | 95 | KKKKKRKGEDENVEDLKKK |
3 | 78 | 83 | KKKKRK |
4 | 81 | 96 | KRKGEDENVEDLKKKK |
5 | 93 | 107 | KKKKAKDETKAKKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021746081.1 | 7e-50 | ABC transporter F family member 4-like | ||||
STRING | XP_010689566.1 | 3e-42 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 1e-27 | nuclear factor Y, subunit C10 |