PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca49312.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Dof
Protein Properties Length: 266aa    MW: 29545.6 Da    PI: 8.4801
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca49312.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.72.9e-3947106362
      zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                 e+alkcprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rknk+ s
  Dca49312.1  47 EEALKCPRCDSSNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRCS 106
                 7899*****************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-3040104IPR003851Zinc finger, Dof-type
PfamPF027012.6E-3348104IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.54450104IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105288IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDVSRVQRHQ EIMASQSLDS MLVCTKPQNQ QQQQQQQQQE KKPRPTEEAL KCPRCDSSNT  60
KFCYYNNYSL TQPRYFCKSC RRYWTKGGTL RNVPVGGGCR KNKRCSRRST PDHLQSSFIT  120
SPTSSTSQHQ LVSPFGSFEH CYTSGIASLG NNFDLFGGNA NNHQYYGGGY LGGGAEHYDL  180
LQLHHHNENN NNVVSSSSES LLTPTIKQEL GGGDNNSHHN RALLSYIMGG GVNGGVGEID  240
AHRESWNAGV LGSSTTWHNL INSPLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734181.19e-74dof zinc finger protein DOF2.1-like
STRINGXP_010689443.13e-64(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.12e-39TARGET OF MONOPTEROS 6