PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca48573.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family E2F/DP
Protein Properties Length: 347aa    MW: 39110.2 Da    PI: 5.1979
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca48573.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP73.71.9e-2399164171
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 r+e+sL+llt+kf++l+++se+g+v+ln +a +L   +v  ++RR+YDi+NVLe+++li k++k+ ++w+g
  Dca48573.1  99 RYESSLGLLTKKFVDLVRQSENGMVDLNIIAIKL---EV--RKRRLYDITNVLEGIGLIVKNSKSVMQWRG 164
                 6899******************************...99..9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-2498166IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.21E-1599162IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-2999164IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.9E-21101164IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.98E-25174279No hitNo description
SuperFamilySSF1440743.4E-19175279No hitNo description
PfamPF164211.1E-16179277IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNLKFAVIVF EVLDYCSRHS LDFVSYDRLN ISENVNEMNN DTSQLKVSHA NKVVDYSLLP  60
ESPSPVTRKR GRKPKKDKQT NMEPSTSDTD CPMAPVICRY ESSLGLLTKK FVDLVRQSEN  120
GMVDLNIIAI KLEVRKRRLY DITNVLEGIG LIVKNSKSVM QWRGSDSETD ELSNQASKLQ  180
IELEGLGSQE ASIDESIREK QLLLETLCDD ESKKKHLYLS AADIMALPNF KGKTVFAIKA  240
PRGSYFEIPD PEKDLCSSGK QCRIIVRSAV KPIDVHVLSS CGAAGNEREV SSNHLQDFNQ  300
LDGSISAKRD TFEIHNITPS DFYSDRSEED YWLKSDIEVS LTDLWSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-1999164773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.22e-65E2F/DP family protein