PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dca48552.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29192.4 Da PI: 5.3896 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.7e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l d++ q+G +W+++++ g+ R +k+c++rw +yl Dca48552.1 16 RGLWSPEEDQRLRDYILQHGISCWSSVPSNAGLQRNGKSCRLRWINYL 63 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.3e-15 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E++ ++ ++k lG++ W+ Ia++++ gRt++++k++w++yl Dca48552.1 69 RGLFSSQEEDTILTLHKNLGNK-WSQIAKELP-GRTDNEIKNYWHSYL 114 7889******************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.523 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-27 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-10 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-13 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-22 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.92E-9 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.835 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.86E-10 | 72 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MGPSKSSEKP GRKHRRGLWS PEEDQRLRDY ILQHGISCWS SVPSNAGLQR NGKSCRLRWI 60 NYLRPGLKRG LFSSQEEDTI LTLHKNLGNK WSQIAKELPG RTDNEIKNYW HSYLKKKQSK 120 SEEIETNTEP NNFTNFPCTA QNDNPSLNQT PYNVVSDIDP MQTIDQNQNQ SLLPRFLFAD 180 WLTADDQTAP PDFLQCFRYN EEGASTCVEN KFGHGEIEDE LENNMMDLPF TFLDQSTVGN 240 CLMGLSTGNV VYSGY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-24 | 16 | 117 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021730475.1 | 9e-94 | transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 1e-58 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | A0A0J8B2S6 | 2e-85 | A0A0J8B2S6_BETVU; Uncharacterized protein | ||||
STRING | XP_010667575.1 | 4e-86 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25560.1 | 4e-60 | myb domain protein 18 |
Publications ? help Back to Top | |||
---|---|---|---|
|