PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca48529.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 440aa    MW: 48402.4 Da    PI: 7.7649
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca48529.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.7e-09116137426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C+++ + G C+yGdrCk+ H+
  Dca48529.1 116 KICNYWVQ-GNCSYGDRCKYLHS 137
                 68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-43161IPR000571Zinc finger, CCCH-type
SMARTSM003560.00213661IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.693662IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7112137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.962112139IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6114138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-7116135IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-7116137IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.74E-49133191IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.5E-48136432IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003208.9E-7143182IPR001680WD40 repeat
PfamPF004004.6E-6145182IPR001680WD40 repeat
PROSITE profilePS5029419.696150440IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.884150191IPR001680WD40 repeat
PROSITE patternPS006780169183IPR019775WD40 repeat, conserved site
PRINTSPR003201.1E-5169183IPR020472G-protein beta WD-40 repeat
SMARTSM003207.8222259IPR001680WD40 repeat
SuperFamilySSF509781.74E-49229435IPR017986WD40-repeat-containing domain
SMARTSM003200.0022266303IPR001680WD40 repeat
PfamPF004000.014271303IPR001680WD40 repeat
PROSITE profilePS5008212.58273312IPR001680WD40 repeat
PROSITE patternPS006780290304IPR019775WD40 repeat, conserved site
PRINTSPR003201.1E-5290304IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0078306343IPR001680WD40 repeat
SMARTSM003203.5347390IPR001680WD40 repeat
PRINTSPR003201.1E-5377391IPR020472G-protein beta WD-40 repeat
SMARTSM003201.2393430IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDVEGGSNRR VFNRLGNNNS NNNHQFHNQN PPNRNNQQQK VCNYWRQGRC NRTPCQFLHR  60
ELPLPSTSSN GGVSKRSYNI GAGVGGNDCG FSTRKNPSFN NTWGRSNAVP TKKLEKICNY  120
WVQGNCSYGD RCKYLHSWNV GDSFSLLTTL EGHKQVVTGI AWPLGKGNLY TGSKDGDVRI  180
WDCETGQCAN VIPLGGEIGC MISEGPWIFI GLPNMVKAWN IETVTEMSLN GPVGQVYALV  240
VGNDLLFAGT QDGSILAWRF NPATNAFEPA ASLAGHTRPV VTLFVGANKL YSGSMDNTIR  300
VWNLETLQCI QTLTDHTSVV MSVLCWDQFL LSASLDQTVK VFAATQSGNL EATYTHNEEH  360
GLLTLCGMHD SEAKPIILCS CNDNSVRLYD LPSFTERGKI FSKQEIRAIQ AGPGGLFFTG  420
DGNGQVRVWN WSTEAKTTAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-201474338323Tako8
6g6n_A4e-201474338323Tako8
6g6n_B4e-201474338323Tako8
6g6n_C4e-201474338323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693461.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0K9QWH90.0A0A0K9QWH9_SPIOL; Uncharacterized protein
STRINGXP_010693461.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1