PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca48482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | MYB | ||||||||
Protein Properties | Length: 347aa MW: 39396.2 Da PI: 5.8604 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEd++lvd+++++G+g+W++ +++ g+ R++k+c++rw +yl Dca48482.1 14 RGPWLPEEDQKLVDYIQEHGPGNWRALPKKAGLQRCGKSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.9e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Dca48482.1 67 RGRFTFEEEEAIIQLHSVLGNK-WSAIAAKLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.654 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.17E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.42E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.849 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGRAPCCDKD GLKRGPWLPE EDQKLVDYIQ EHGPGNWRAL PKKAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF TFEEEEAIIQ LHSVLGNKWS AIAAKLPGRT DNEIKNYWNT HIRKRLLKMG 120 IDPVTHTRRF DLLDHLPSIL NSPLQNSSQL NLLKLLSLQT LVNPDLLKLA TLLSPNQNPN 180 FFLPNLQTND EFVNNISNSM QNQYHQVTQT HATFPNNIPN CTTMTTALGS NGQVMQPTNN 240 FDALKFEPQI NSFLSNDDWQ NNVSLSQLID SNVQQGYNGQ FINNDRIFND DFLGNAPGLS 300 TPSTSEETPL NSISEHVNSS ICNSEDEIDS YCRNLMNLDV LDDLFNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-30 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596793.1 | 1e-114 | transcription factor MYB102-like | ||||
Swissprot | Q9LDR8 | 8e-98 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A2C9U827 | 1e-113 | A0A2C9U827_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_028193m | 1e-113 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-88 | MYB-like 102 |
Publications ? help Back to Top | |||
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