PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca48192.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 357aa    MW: 39948.5 Da    PI: 4.8477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca48192.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19102152256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a++a ++k++g+
  Dca48192.1 102 QYRGIRQRP-WGKWAAEIRDPKK---GVRVWLGTYNTAEEAARAYDAEARKIRGN 152
                 69*******.**********954...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.4E-32102160IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-22102160IPR016177DNA-binding domain
CDDcd000182.05E-32102159No hitNo description
SMARTSM003809.1E-37102165IPR001471AP2/ERF domain
PROSITE profilePS5103223.947102159IPR001471AP2/ERF domain
PRINTSPR003672.2E-11103114IPR001471AP2/ERF domain
PfamPF008473.4E-12103151IPR001471AP2/ERF domain
PRINTSPR003672.2E-11125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MCGGSIISSL ITDIKSRKAA ESLLWPDLQT INSKPLKSIT VVDDEDLKFE ADFLEFKDDV  60
FDSKVAINSP FVPRDTFKIN GLKAKEVNGK SEKSANRKRK NQYRGIRQRP WGKWAAEIRD  120
PKKGVRVWLG TYNTAEEAAR AYDAEARKIR GNKAKVNFPR EAEQASSPRR TVKVRSQKPA  180
VIPNPTPALQ NVNQNFDVMN NFDEQQFDDF LFAEEKPQIT PVSALADAGL QVFASSDGSN  240
QYLTSDEGSH SLDISDFGWG ENRPKTPEIS SLFCTEDGNA NKKVKLNMGN AVPAEHNHGN  300
TISEADFESE LKHLEMPYLD DIWEMDAFLA SEFSQEGVNS ADPWSFDDLP AFTLGVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21102159260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-201011671380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720392.11e-122ethylene-responsive transcription factor RAP2-12-like
RefseqXP_021720393.11e-122ethylene-responsive transcription factor RAP2-12-like
TrEMBLB6UZ631e-118B6UZ63_9CARY; Dehydration-responsive element binding protein
STRINGXP_010685231.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-65related to AP2 12