PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca48051.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 317aa MW: 34520.9 Da PI: 8.4678

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca48051.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.5	2.7e-12	65	109	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Dca48051.1 65 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 109 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.28E-16	59	115	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.876	60	114	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-6	62	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-18	63	112	IPR006447	Myb domain, plants
SMART	SM00717	9.6E-10	64	112	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-10	65	109	IPR001005	SANT/Myb domain
CDD	cd00167	1.31E-7	67	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MVSMNPTSPE GFYLDADGVA LPGINSFSPS PANSAADAAA HTAGTSADDL NSKKVRKPYT 60 ISKSRESWTE PEHDKFLEAL QLFDRDWKKI EAFIGSKTVI QIRSHAQKYF LKVQKSGSNE 120 HLPPPRPKRK AAHPYPQKAP KTTSVSQATG SLPASEPVIQ RLEPTIVPRI CNNTAVMSSW 180 VPNSQTAGLP NETQGDTKST KPTIVNNSSS STESTAVART GKLNEALKHG PPLRVLPDFA 240 QVYSFIGSVF DPEASNHLQR LKKMDPIDVE TALLLMRNLS INLTSPDFED HRRLLSSCDI 300 DSDKAISSGM NNIVCGD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010671614.1	1e-164	PREDICTED: protein REVEILLE 6 isoform X1
Refseq	XP_021765020.1	1e-164	protein REVEILLE 6-like
Swissprot	Q8H0W3	1e-108	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A0K9RE61	1e-143	A0A0K9RE61_SPIOL; Uncharacterized protein
STRING	XP_010671614.1	1e-164	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.1	4e-94	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]