PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47957.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 536aa    MW: 60427.4 Da    PI: 5.3864
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47957.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.6e-091335326
                S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                +++Cr+++r G C++G  CkF H+
  Dca47957.1 13 RPICRYHLR-GNCSRGLDCKFQHP 35
                89*******.*************9 PP

2zf-CCCH25.72e-086889426
                ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                + Cr+++r G C +G  CkF H+
  Dca47957.1 68 PVCRYYLR-GNCDRGLDCKFQHP 89
                68******.*************9 PP

3zf-CCCH253.3e-08122143426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + Crf++r G C +G  CkF H+
  Dca47957.1 122 PVCRFYLR-GNCGRGLDCKFQHP 143
                 68******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.1591037IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-51136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-51235IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-71335IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-56590IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-56789IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-66889IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0016990IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8076991IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5119144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5121143IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-6122143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.516123145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-4123144IPR000571Zinc finger, CCCH-type
SMARTSM003560.7183209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.704183210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4185212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5096913.445350520IPR004274FCP1 homology domain
SuperFamilySSF567848.07E-6350530IPR023214HAD-like domain
PfamPF030313.1E-5429527IPR004274FCP1 homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MYSEDLKEGE DSRPICRYHL RGNCSRGLDC KFQHPDVENR DGFQLFSDTI QNSQFQVEDL  60
KEGEGWAPVC RYYLRGNCDR GLDCKFQHPD VDNRDGFQFF SDTNQNSQFQ VEDLKEGEGW  120
APVCRFYLRG NCGRGLDCKF QHPDVDNRDG FQSFSDTKQN SRFYSGNSDG DSSGCARYSG  180
GNEQKREFCI KFTQGTCLKG SNCKHFHSYH EYATSDYYQC GTMATTSMTR GDGTFRNGKT  240
HSRTSNTCSR AEEKSVDLGT DCRTEEYLTS SSKCVVESMT EEVADTSSRK VPVCTLERTS  300
VDHENVMSVS EVINSSVPII DDASNNGVLL GNADISCSLQ VSRSLDNVVL KSRKKMLVLD  360
VDGLLADIVA VFPARFKPDF KLKGEGAYCV QFLLLIFLLV LLRGIQLHSL IRGAFLVVTA  420
SYVTERSMNF VQDHSHCTKT DEKPLVLKEL KKLWQNTGND VPWDTGFYDE SNTILLDASP  480
CSGLSNPPYT AVYPMPYSFE HVNDRSLGPG GNLRLYLERL AEAEDVRNFI RIYPFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.24e-12C3H family protein