PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca47957.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 536aa MW: 60427.4 Da PI: 5.3864 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.5 | 2.6e-09 | 13 | 35 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++Cr+++r G C++G CkF H+ Dca47957.1 13 RPICRYHLR-GNCSRGLDCKFQHP 35 89*******.*************9 PP | |||||||
2 | zf-CCCH | 25.7 | 2e-08 | 68 | 89 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + Cr+++r G C +G CkF H+ Dca47957.1 68 PVCRYYLR-GNCDRGLDCKFQHP 89 68******.*************9 PP | |||||||
3 | zf-CCCH | 25 | 3.3e-08 | 122 | 143 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + Crf++r G C +G CkF H+ Dca47957.1 122 PVCRFYLR-GNCGRGLDCKFQHP 143 68******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.159 | 10 | 37 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 11 | 36 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-5 | 12 | 35 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-7 | 13 | 35 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-5 | 65 | 90 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 67 | 89 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-6 | 68 | 89 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 69 | 90 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.807 | 69 | 91 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-5 | 119 | 144 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 121 | 143 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-6 | 122 | 143 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.516 | 123 | 145 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.8E-4 | 123 | 144 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.7 | 183 | 209 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.704 | 183 | 210 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-4 | 185 | 212 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50969 | 13.445 | 350 | 520 | IPR004274 | FCP1 homology domain |
SuperFamily | SSF56784 | 8.07E-6 | 350 | 530 | IPR023214 | HAD-like domain |
Pfam | PF03031 | 3.1E-5 | 429 | 527 | IPR004274 | FCP1 homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MYSEDLKEGE DSRPICRYHL RGNCSRGLDC KFQHPDVENR DGFQLFSDTI QNSQFQVEDL 60 KEGEGWAPVC RYYLRGNCDR GLDCKFQHPD VDNRDGFQFF SDTNQNSQFQ VEDLKEGEGW 120 APVCRFYLRG NCGRGLDCKF QHPDVDNRDG FQSFSDTKQN SRFYSGNSDG DSSGCARYSG 180 GNEQKREFCI KFTQGTCLKG SNCKHFHSYH EYATSDYYQC GTMATTSMTR GDGTFRNGKT 240 HSRTSNTCSR AEEKSVDLGT DCRTEEYLTS SSKCVVESMT EEVADTSSRK VPVCTLERTS 300 VDHENVMSVS EVINSSVPII DDASNNGVLL GNADISCSLQ VSRSLDNVVL KSRKKMLVLD 360 VDGLLADIVA VFPARFKPDF KLKGEGAYCV QFLLLIFLLV LLRGIQLHSL IRGAFLVVTA 420 SYVTERSMNF VQDHSHCTKT DEKPLVLKEL KKLWQNTGND VPWDTGFYDE SNTILLDASP 480 CSGLSNPPYT AVYPMPYSFE HVNDRSLGPG GNLRLYLERL AEAEDVRNFI RIYPFS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 4e-12 | C3H family protein |