PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47956.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 545aa    MW: 61370.2 Da    PI: 6.0861
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47956.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-061335326
                S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                ++ Cr+++r G C++G  Ck+ H+
  Dca47956.1 13 RPVCRDHLR-GNCHRGLYCKYQHP 35
                789******.*************9 PP
2zf-CCCH22.81.7e-076789326
                S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                +++Cr++++ G C +G  CkF H+
  Dca47956.1 67 RPICRDHLQ-GNCGRGLYCKFQHP 89
                89*******.*************9 PP
3zf-CCCH253.4e-08122143426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + Cr+++r G C +G  C+F+H+
  Dca47956.1 122 PVCRYYLR-GNCGRGLDCRFHHP 143
                 68******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0191037IPR000571Zinc finger, CCCH-type
SMARTSM003560.0291136IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-41335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0656491IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-46590IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-56789IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5119144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5121143IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-6122143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.366123145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.047183210IPR000571Zinc finger, CCCH-type
SMARTSM003563.5183209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.40.50.10008.4E-14355540IPR023214HAD-like domain
PROSITE profilePS5096925.073355529IPR004274FCP1 homology domain
SuperFamilySSF567842.75E-19355539IPR023214HAD-like domain
SMARTSM005771.9E-7358513IPR004274FCP1 homology domain
PfamPF030311.6E-22360536IPR004274FCP1 homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MYSEDLKVGE GSRPVCRDHL RGNCHRGLYC KYQHPDVDKG DGFQFFSDTK QNSRFHGEDL  60
KEGESSRPIC RDHLQGNCGR GLYCKFQHPD VDNRDGFQLF SDTKQNSQFQ GEDLKEGEGW  120
APVCRYYLRG NCGRGLDCRF HHPDVYKHDG FQFFSDTEQN SRFPGGNSDG DSSGCERYSG  180
GSEQKREFCI KFTEGRCFKG SSCKEFHSYH EYATSVYYHG GTMATTTVTR GEGTFRNMKT  240
HSRTSDTCSH AEETSVDLGT DSLTEDIPVG SNLTSSSKCA VESMTEEVAD TSSRKVPVCT  300
LERTSVDHEN VMSVSEVINS SVQIIDDVSD NGLLHGNADI SCSLQVSRSL DNVVLKSRKK  360
MLVLDVDGLL ADIVAVFPAR FKPDYKLKGE GVFKRPFCDG FLKFCFEKFD VGIWSSRTKG  420
NVAAVVDFLM KNTGNKLLFH WDHSHCSKTD EKPLVLKELK KLWQNAENDL PWNRGFYDES  480
NTILLDASPC SGLSNPPYTA VYPMPYSFEH VNDRSLGPGG DLRIYLERLA EAEDVQNFIR  540
IFPFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.24e-08C3H family protein