PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca47780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 256aa MW: 28784 Da PI: 6.7754 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.3 | 8.4e-11 | 148 | 172 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tC++Gd+CkF H+ Dca47780.1 148 GEKDCAHYMLTRTCRFGDTCKFDHP 172 7889********************8 PP | |||||||
2 | zf-CCCH | 37.1 | 5.3e-12 | 224 | 248 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+ +tG Ck+G++CkF+H++ Dca47780.1 224 EPNCSFYVKTGKCKFGASCKFHHPK 248 799********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.178 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0024 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 147 | 173 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-8 | 148 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-4 | 152 | 171 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.094 | 221 | 249 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-5 | 221 | 248 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-9 | 224 | 248 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 225 | 249 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-5 | 227 | 247 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MANHHLYGQH HRSNNPYSSS RSSVDKSSYY SDHSSSSRYY SSSYNDPLYL SSDTAPYSSY 60 APSSSVTAAF RDGSSPYSKR PSEGARPYEV SDLMKCLTSM RYVLLNHCIA LILLENHQSD 120 AWLASDSLAK RPKFQSACNL PVYPQRPGEK DCAHYMLTRT CRFGDTCKFD HPIWVPEGGI 180 PDWKEIQLPP IPSDFHPERP GELDCPAVSD QTETAADLPE RPSEPNCSFY VKTGKCKFGA 240 SCKFHHPKDI QIPLDE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010693153.1 | 2e-68 | PREDICTED: zinc finger CCCH domain-containing protein 37 | ||||
Swissprot | Q941Q3 | 1e-59 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A0J8BGV7 | 5e-67 | A0A0J8BGV7_BETVU; Uncharacterized protein | ||||
STRING | XP_010693153.1 | 8e-68 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-60 | floral homeotic protein (HUA1) |