PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca47779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 183aa MW: 19749.3 Da PI: 7.9259 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.3 | 9.3e-12 | 4 | 28 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+++tG Cky ++C+++H+ Dca47779.1 4 GEVDCPFYMKTGSCKYAANCRYNHP 28 6789********************9 PP | |||||||
2 | zf-CCCH | 38.1 | 2.5e-12 | 84 | 108 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+++ G+C++G+ CkF H+ Dca47779.1 84 GQSACDFYMKAGICNFGEACKFDHP 108 7789********************9 PP | |||||||
3 | zf-CCCH | 38.5 | 1.9e-12 | 133 | 154 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+f+++tGtCkyG +Ck+ H+p Dca47779.1 133 CPFYMKTGTCKYGVTCKYDHPP 154 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.136 | 2 | 30 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 4 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 7 | 29 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 8 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.117 | 82 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-6 | 82 | 109 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-10 | 84 | 108 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-4 | 88 | 108 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.094 | 127 | 155 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-6 | 127 | 154 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 131 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-5 | 133 | 152 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-10 | 133 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MRSGEVDCPF YMKTGSCKYA ANCRYNHPDR NDINPPVASL LASPIANLPM GLVSSAAAIL 60 QSFQPSLAQT TLGLGAVNYP QRPGQSACDF YMKAGICNFG EACKFDHPVD RSASKNVKLT 120 LAGYPRREGA VHCPFYMKTG TCKYGVTCKY DHPPPGEVVA ATGKENAETT KEAKENKEND 180 ESA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010260864.1 | 3e-79 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Refseq | XP_010260865.1 | 3e-79 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
Swissprot | Q941Q3 | 2e-69 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A1U8A3F1 | 7e-78 | A0A1U8A3F1_NELNU; zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
TrEMBL | A0A1U8AEV7 | 6e-78 | A0A1U8AEV7_NELNU; zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
TrEMBL | V4S9N1 | 2e-78 | V4S9N1_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_010260864.1 | 1e-78 | (Nelumbo nucifera) | ||||
STRING | XP_006422335.1 | 3e-79 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-69 | floral homeotic protein (HUA1) |