PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47754.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 362aa    MW: 38567.9 Da    PI: 8.8728
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47754.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-10627426
                ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                 lCr+f+r G C+yGd+CkF H+
  Dca47754.1  6 DLCRNFQR-GSCHYGDKCKFLHS 27
                79******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.901229IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6430IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8627IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-9630IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSLRKDLCRN FQRGSCHYGD KCKFLHSNQQ QQKPNAFGFG SQTNAQQQKP NPFGFGVQNS  60
GPAAGSGGFK VSVLAFLCEI IMISTILHPF ENKWVRPGQS TNQSQGTQSQ SAANHECTDP  120
AVCKRIIAED FQNERPLWKL TCYGHYKQPS TPSNNAFAPS QQSTPSNNAF APFQGSGPIG  180
STSVPSGLFG TQVPTQTAGN PFAAQTSGTS FAVPTTGSPF ASNMAGFGNG GMNSQGSQAP  240
LQTSGNPFAS NISPFGNSGF GTQGNNMSPS LPTTQQQIQT PAFGQPSMLA NGLSNSIPTE  300
QRYISSKSHD LILVASSRTD QAIKVLTVVQ KETVPADASI WAKAEWKLGE IPEQPPPPEY  360
VR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.13e-32C3H family protein