PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca47754.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C3H

Protein Properties

Length: 362aa MW: 38567.9 Da PI: 8.8728

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca47754.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.7	1.3e-10	6	27	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 lCr+f+r G C+yGd+CkF H+ Dca47754.1 6 DLCRNFQR-GSCHYGDKCKFLHS 27 79****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.901	2	29	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.9E-5	3	28	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-6	4	30	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.2E-8	6	27	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.7E-9	6	30	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MSLRKDLCRN FQRGSCHYGD KCKFLHSNQQ QQKPNAFGFG SQTNAQQQKP NPFGFGVQNS 60 GPAAGSGGFK VSVLAFLCEI IMISTILHPF ENKWVRPGQS TNQSQGTQSQ SAANHECTDP 120 AVCKRIIAED FQNERPLWKL TCYGHYKQPS TPSNNAFAPS QQSTPSNNAF APFQGSGPIG 180 STSVPSGLFG TQVPTQTAGN PFAAQTSGTS FAVPTTGSPF ASNMAGFGNG GMNSQGSQAP 240 LQTSGNPFAS NISPFGNSGF GTQGNNMSPS LPTTQQQIQT PAFGQPSMLA NGLSNSIPTE 300 QRYISSKSHD LILVASSRTD QAIKVLTVVQ KETVPADASI WAKAEWKLGE IPEQPPPPEY 360 VR

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MSLRKDLCRN FQRGSCHYGD KCKFLHSNQQ QQKPNAFGFG SQTNAQQQKP NPFGFGVQNS  60
GPAAGSGGFK VSVLAFLCEI IMISTILHPF ENKWVRPGQS TNQSQGTQSQ SAANHECTDP  120
AVCKRIIAED FQNERPLWKL TCYGHYKQPS TPSNNAFAPS QQSTPSNNAF APFQGSGPIG  180
STSVPSGLFG TQVPTQTAGN PFAAQTSGTS FAVPTTGSPF ASNMAGFGNG GMNSQGSQAP  240
LQTSGNPFAS NISPFGNSGF GTQGNNMSPS LPTTQQQIQT PAFGQPSMLA NGLSNSIPTE  300
QRYISSKSHD LILVASSRTD QAIKVLTVVQ KETVPADASI WAKAEWKLGE IPEQPPPPEY  360
VR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.1	3e-32	C3H family protein