PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47534.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 576aa    MW: 64599.5 Da    PI: 6.2995
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47534.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.1e-11178201326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + C ++ +tGtCk+G +C+F+H+
  Dca47534.1 178 VVDCTYYTKTGTCKFGKNCRFNHP 201
                 689********************9 PP

2zf-CCCH32.71.3e-10230251526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++++  G+CkyGd C+++H+
  Dca47534.1 230 ECKYYQTAGWCKYGDACRYNHS 251
                 6********************7 PP

3zf-CCCH29.61.2e-09275297527
                 --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 +C ++++ G C yG++C+F+H++
  Dca47534.1 275 ECAYYLQHGSCAYGASCRFNHPE 297
                 7********************96 PP

4zf-CCCH32.61.4e-10418443126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ++++ C+ff++tG+Ck+ + C+++H+
  Dca47534.1 418 PGQPDCNFFMKTGYCKFRSACRYNHP 443
                 5789*********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.183175203IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-6176202IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-9178201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5180202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4181200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699225253IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4226252IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-8230251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6230254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5231252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971270298IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-4270297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5272298IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-7275297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4276296IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5417444IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342417445IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-6419443IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-5422446IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MATCEEESSA SFESRNAIIM DADNDVEVIK VMVSGDVSGH GDGDECRRTY VVAEEDGVVE  60
QVDKLELQSN CSNGSKIEEE KREESIECND DNDVADIKVT VNGDVSSHAD GDECRTYVVV  120
EEDGAVEQQL ERLELQSNCS NGSKIEEEKR EEHVECNDDN NVAENKAKSR AYSLRPYVVD  180
CTYYTKTGTC KFGKNCRFNH PLWRAFKPGG DKEKTCDESI ESVDDATKIE CKYYQTAGWC  240
KYGDACRYNH SARKIEKEYL QLNFLGLPIR PTAQECAYYL QHGSCAYGAS CRFNHPEPSA  300
VNEHDKSGDS LGNDNFVEPG VNSSRNCRGV SLQSFGGLQQ HASMSHNDID LRNGSNDMMS  360
SYHQRLPQTP ETDPSQVISP SANEFLLPHQ TVSSISERVA PVSHDENPIE FDEFPVRPGQ  420
PDCNFFMKTG YCKFRSACRY NHPSRQMSKQ SKPPPILPSQ LLNGMYSTRH KNQQMHRALS  480
EQGLPLRPLI LRMYRRSPPA IHGTASHRVP HRRATANQSL STHFHLLPPQ KFATTLNFPP  540
YHSPHRSTAA GRLPRRRPTA TFPTATTCST TSHLLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010674845.13e-88(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.14e-55C3H family protein