PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca47534.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C3H

Protein Properties

Length: 576aa MW: 64599.5 Da PI: 6.2995

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca47534.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.6	3.1e-11	178	201	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C ++ +tGtCk+G +C+F+H+ Dca47534.1 178 VVDCTYYTKTGTCKFGKNCRFNHP 201 689********************9 PP
2	zf-CCCH	32.7	1.3e-10	230	251	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++ G+CkyGd C+++H+ Dca47534.1 230 ECKYYQTAGWCKYGDACRYNHS 251 6********************7 PP
3	zf-CCCH	29.6	1.2e-09	275	297	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C ++++ G C yG++C+F+H++ Dca47534.1 275 ECAYYLQHGSCAYGASCRFNHPE 297 7********************96 PP
4	zf-CCCH	32.6	1.4e-10	418	443	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++tG+Ck+ + C+++H+ Dca47534.1 418 PGQPDCNFFMKTGYCKFRSACRYNHP 443 5789*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.183	175	203	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.6E-6	176	202	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.5E-9	178	201	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.28E-5	180	202	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	181	200	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.699	225	253	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.5E-4	226	252	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.8E-8	230	251	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.2E-6	230	254	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.9E-5	231	252	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.971	270	298	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.5E-4	270	297	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.15E-5	272	298	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-7	275	297	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-4	276	296	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1E-5	417	444	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.342	417	445	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-6	419	443	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.06E-5	422	446	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MATCEEESSA SFESRNAIIM DADNDVEVIK VMVSGDVSGH GDGDECRRTY VVAEEDGVVE 60 QVDKLELQSN CSNGSKIEEE KREESIECND DNDVADIKVT VNGDVSSHAD GDECRTYVVV 120 EEDGAVEQQL ERLELQSNCS NGSKIEEEKR EEHVECNDDN NVAENKAKSR AYSLRPYVVD 180 CTYYTKTGTC KFGKNCRFNH PLWRAFKPGG DKEKTCDESI ESVDDATKIE CKYYQTAGWC 240 KYGDACRYNH SARKIEKEYL QLNFLGLPIR PTAQECAYYL QHGSCAYGAS CRFNHPEPSA 300 VNEHDKSGDS LGNDNFVEPG VNSSRNCRGV SLQSFGGLQQ HASMSHNDID LRNGSNDMMS 360 SYHQRLPQTP ETDPSQVISP SANEFLLPHQ TVSSISERVA PVSHDENPIE FDEFPVRPGQ 420 PDCNFFMKTG YCKFRSACRY NHPSRQMSKQ SKPPPILPSQ LLNGMYSTRH KNQQMHRALS 480 EQGLPLRPLI LRMYRRSPPA IHGTASHRVP HRRATANQSL STHFHLLPPQ KFATTLNFPP 540 YHSPHRSTAA GRLPRRRPTA TFPTATTCST TSHLLS

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MATCEEESSA SFESRNAIIM DADNDVEVIK VMVSGDVSGH GDGDECRRTY VVAEEDGVVE  60
QVDKLELQSN CSNGSKIEEE KREESIECND DNDVADIKVT VNGDVSSHAD GDECRTYVVV  120
EEDGAVEQQL ERLELQSNCS NGSKIEEEKR EEHVECNDDN NVAENKAKSR AYSLRPYVVD  180
CTYYTKTGTC KFGKNCRFNH PLWRAFKPGG DKEKTCDESI ESVDDATKIE CKYYQTAGWC  240
KYGDACRYNH SARKIEKEYL QLNFLGLPIR PTAQECAYYL QHGSCAYGAS CRFNHPEPSA  300
VNEHDKSGDS LGNDNFVEPG VNSSRNCRGV SLQSFGGLQQ HASMSHNDID LRNGSNDMMS  360
SYHQRLPQTP ETDPSQVISP SANEFLLPHQ TVSSISERVA PVSHDENPIE FDEFPVRPGQ  420
PDCNFFMKTG YCKFRSACRY NHPSRQMSKQ SKPPPILPSQ LLNGMYSTRH KNQQMHRALS  480
EQGLPLRPLI LRMYRRSPPA IHGTASHRVP HRRATANQSL STHFHLLPPQ KFATTLNFPP  540
YHSPHRSTAA GRLPRRRPTA TFPTATTCST TSHLLS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_010674845.1	3e-88	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	4e-55	C3H family protein