PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca4753.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CAMTA
Protein Properties Length: 622aa    MW: 68894.3 Da    PI: 5.2902
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca4753.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.86.7e-56111272117
       CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                l+e +krwlk+ e++ iL+n++++++t+e++++p+sgsl+L+n++++r+frkDG++w+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqrr+yw
  Dca4753.1  11 LQEaQKRWLKPAEVLFILQNHANYQITAEAPQKPPSGSLFLFNKRVLRFFRKDGHNWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEDNPSFQRRSYW 110
                55669*********************************************************************************************** PP

       CG-1 101 lLeeelekivlvhylev 117
                +Le ++e+ivlvhy+e+
  Dca4753.1 111 MLEPAYEHIVLVHYRET 127
                ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.0417133IPR005559CG-1 DNA-binding domain
SMARTSM010768.6E-7810128IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4813126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.1E-7379466IPR013783Immunoglobulin-like fold
PfamPF018338.3E-9382465IPR002909IPT domain
SuperFamilySSF812965.18E-17382466IPR014756Immunoglobulin E-set
CDDcd001024.06E-6382467No hitNo description
PROSITE profilePS5029712.09576622IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.22E-8577621IPR020683Ankyrin repeat-containing domain
CDDcd002041.28E-6581622No hitNo description
Gene3DG3DSA:1.25.40.201.2E-7581621IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MQSGFDINQL LQEAQKRWLK PAEVLFILQN HANYQITAEA PQKPPSGSLF LFNKRVLRFF  60
RKDGHNWRKK KDGRTVGEAH ERLKVGNAEA LNCYYAHGED NPSFQRRSYW MLEPAYEHIV  120
LVHYRETSEG KLSPGSVSDP SPGSSSLSDS YQNHLSPSSL EVNSDTTTGK PLDYLNGSTA  180
TDNLGVMSES DVSQALRRLE MQLSLDDDSV KGYVPPDEMA GNEDKFGIPN DPYSRYPGIS  240
SQSDVLPSQP GSGYNKVTRH LSQSVEQNTM IGASLSWNDV LGFPNNCQQL QPDGLDGKKA  300
SNMNSRGTIS SSFGKLEQES HQAKLFKANN GIEAAEGLSR LAHSSQMYPV SSDLSMMLLD  360
PTVEMPAATA LSLTIAKEQR FTIREISPEW GFANASTKVI IVGSFLCDPS DCTWHCMFGD  420
VEVPLQILQD GVFTCQAPPC LPGKVTLCIT SGNRESCSEI REFEYRTKHI PCPHCDNREG  480
ASKSTEEILL LVRLVKMLLS NSHANQGESN ELEVDPWMKE KGVDDSLDQI MEALLVGGGT  540
STGTLDWLVE QLIKDKLQHW LSSRTTEGVD SSLSRKEQGV IHMIAGLGYE WALNPLLENG  600
VGVNFRDING WTALHWAARF GR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021723085.10.0calmodulin-binding transcription activator 4-like isoform X1
TrEMBLA0A0K9QIH30.0A0A0K9QIH3_SPIOL; Uncharacterized protein
STRINGXP_010682739.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-147Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains