PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca4751.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 252aa    MW: 29121.5 Da    PI: 8.2664
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca4751.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.33.1e-31959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Dca4751.1  9 KRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
               79***********************************************96 PP
2K-box89.56e-30871741198
      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                +a + s+qqe+ +Lk+++e Lqr++R+llGedL+ L+ keL++Le+qL++slk++Rs +++++++q+ +lq++e+ l+e+n+aL+++l
  Dca4751.1  87 QALELSSQQEYLRLKARYEALQRTHRNLLGEDLGGLNTKELESLERQLDSSLKQVRSIRTQYMVDQLTDLQRQEHTLNEANQALKQRL 174
                4445689******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.955161IPR002100Transcription factor, MADS-box
SMARTSM004327.4E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-32278IPR002100Transcription factor, MADS-box
CDDcd002651.81E-44276No hitNo description
PRINTSPR004042.9E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-2490174IPR002487Transcription factor, K-box
PROSITE profilePS5129714.42790181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGVLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
PSMLKTLERY QKSNYAAPDD SVSTREQALE LSSQQEYLRL KARYEALQRT HRNLLGEDLG  120
GLNTKELESL ERQLDSSLKQ VRSIRTQYMV DQLTDLQRQE HTLNEANQAL KQRLIESNQS  180
GTFQWNGHEV GYGRDNDNPT HAAHHHHHHP DHAFFHPLQS QPTTLHIGYQ QDQINVTQDG  240
PSMNNFMTGW LP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-40751761103Developmental protein SEPALLATA 3
4ox0_B4e-40751761103Developmental protein SEPALLATA 3
4ox0_C4e-40751761103Developmental protein SEPALLATA 3
4ox0_D4e-40751761103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682729.11e-133PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X2
SwissprotQ8LLR01e-131MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBLQ75QK21e-133Q75QK2_SILLA; SEPALLATA3 homologous protein
STRINGXP_010682728.11e-132(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-105MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]