PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47235.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRAS
Protein Properties Length: 675aa    MW: 76035 Da    PI: 5.0503
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47235.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.93.3e-1133026731374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL +cA+avs+ dl+ a++lL+r+++++s++gd+++R+a+yf++AL+ar+a+++s+ +  +   + s   ss+ l+a++ ++ + P+ ++s+++aN
  Dca47235.1 302 LRTLLNSCAQAVSTFDLRSANELLKRIRQHSSQYGDSIERAAHYFANALEARIAGTGSTFSTNIVDARIS---SSDFLKAYRDYVTAVPYKRVSYFLAN 397
                 5789***************************************************888888777666666...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  +Il+ + +++++HiiDf+i  GlQWp+L+qaL++Rpegpp+lR+Tg++ p++g   +e++e+tg+rL+ ++e++gvpf++++ v+++++++++e+L++
  Dca47235.1 398 TTILKLAVTANKIHIIDFGILLGLQWPCLIQALSKRPEGPPELRLTGIDYPQHGfrPAEKVEATGRRLTGYCERFGVPFKYQA-VSQKWNSIKPEDLNI 495
                 *****************************************************9*****************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +++E ++Vn+v++  +llde+v+ +s +d++L+lvk+l+P+++++   +   n++ F++rf eal +ys lfd +ea+lpre+++r+ +E el g+e+ 
  Dca47235.1 496 ESDELVIVNCVYRSGTLLDETVEADSSKDAFLRLVKDLKPNIFIHGVINGTFNAPFFVTRFKEALFHYSGLFDVFEATLPRENHARQLIESELYGKELL 594
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nvvaceg+er++r e++++W+ r  +aGFk++pl+ +  k+ak+  +  + + + v+e+++++v+gWk+r   ++S+W+
  Dca47235.1 595 NVVACEGSERIQRPESYRQWQVRSVRAGFKQLPLERELLKKAKAKAKANYLEDFVVDEDRNWMVQGWKGRIFCALSFWK 673
                 **************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.854276653IPR005202Transcription factor GRAS
PfamPF035141.1E-110302673IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MYPELMSNFP NHQNFVTNET ENGEVFQAYN LLDEIKPNFV DLNESSFSSE DSVKIPDFSD  60
ACIKFLGDIL LEEGLDDTPP STVQEFKALQ ATEKSLYDVL GEQYNNNNNN NNNTSHDHDL  120
VSSLYQSIDN HIDGFDGSFG DDFVSKIVEN ESKVEPFLTL DDLSKSLLQL NSQSSGSSNS  180
GDSGDNKLVT SPVSTLTSQV TTEKAKKPVS RSRTRKKNRQ RDDVGYEDVR GNKQQASFNE  240
DYVEMEEYDD ILLCKEDKVD DAETPENGSS CVVGNGNGNG MLQKKGSKGR KKGSNLAEEV  300
DLRTLLNSCA QAVSTFDLRS ANELLKRIRQ HSSQYGDSIE RAAHYFANAL EARIAGTGST  360
FSTNIVDARI SSSDFLKAYR DYVTAVPYKR VSYFLANTTI LKLAVTANKI HIIDFGILLG  420
LQWPCLIQAL SKRPEGPPEL RLTGIDYPQH GFRPAEKVEA TGRRLTGYCE RFGVPFKYQA  480
VSQKWNSIKP EDLNIESDEL VIVNCVYRSG TLLDETVEAD SSKDAFLRLV KDLKPNIFIH  540
GVINGTFNAP FFVTRFKEAL FHYSGLFDVF EATLPRENHA RQLIESELYG KELLNVVACE  600
GSERIQRPES YRQWQVRSVR AGFKQLPLER ELLKKAKAKA KANYLEDFVV DEDRNWMVQG  660
WKGRIFCALS FWKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-503026735375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106559.10.0PREDICTED: scarecrow-like protein 34
TrEMBLA0A0K9QAZ30.0A0A0K9QAZ3_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010685730.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-153SCARECROW-like 14