PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca47157.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Nin-like

Protein Properties

Length: 942aa MW: 105553 Da PI: 6.8626

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca47157.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5e-29	630	680	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Dca47157.1 630 QKTISLQVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGIARWPSRKIKKV 680 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	619	700	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-24	632	680	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.24E-20	845	926	No hit	No description
SMART	SM00666	1.4E-21	846	929	IPR000270	PB1 domain
PROSITE profile	PS51745	19.807	846	929	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.5E-20	847	926	No hit	No description
CDD	cd06407	5.19E-36	847	926	No hit	No description
Pfam	PF00564	6.0E-15	848	926	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence Send to blast
MDDHGFNPQN SSIFGNMDYD FMEQLLDDGC WLQTADGSSF LQPGPSTSRS FSFPSYRVPS 60 TLTYTPHEES ERWSSLPNIP KEEQVSDSQY EDEQSIVPVT RLQNQPLSFT WEGDEINRIL 120 WIEPKANTGP STTVKDRLML AVSQLKELNK NRDVLIQIWV PVKKGLTSFL TTVAQPYFLQ 180 PNSASLLQYR DVSERYEFLA DEDSKQAFGL PGRVFLGKVP EWTPDVRFFK QDEYPRSKFA 240 HQFDVRGSIA LPVFEKGSGD CLGVVEIIMT TEKFNYRPEI ESVCQALENV HLRSSEILYS 300 SQEQVSQATL VFLTLFIFCS LLFHWQKNRH IVLSLQPGKG SFEAVKPEIL NVLKTVSDAH 360 DLPLAQTWAS CLQQGKGGCW ISDNQNALCV STIDSACYVR DQHVLDFHTA CSEHHLLRGR 420 GGIIGKAFDT NQLCFATDVT EFSKADYPLS HHAKMFGLRG AVAIRLQSIY HDSNEYVLEF 480 FLPTNLQEGG LGVHGRIWQT LTMAVQQNCH SLKFITVSNY MLPTLFSEKQ TPENETKEET 540 SSWVSHIVEP RRKGKEVASL DFGEDEPGKE FQFSTNWSNS EPELQLGQVF SDSGNVKRSS 600 KSDGISGVSS GGRFPLGCRK SGEKRRTKAQ KTISLQVLRQ YFAGSLKDAA KNIGVCPTTL 660 KRICRQHGIA RWPSRKIKKV GHSLKKLQLV IDSVQGTDGS IQLSSFYTKF PELNSSNTQL 720 TDTQAPLFNL ADQSKQQPTT QAEGSIFSSG PTTSNSASTS SSQTSTSSQC FPSGSKMSSP 780 ITTDDISGSL KRARSEAELQ ILPTKEHNKI LERTHSSKAQ IDHRPPFETI PDFPIPKSLP 840 LRDAGVFKAK ATFGEEKVRF TVLPNMGFQR FQQEIATRFN LVDLSMIGIK YLDDDHEWVL 900 LTCDADLEEC IDIHRSSGSR TIRLTLSRIT SSGGFTRSKG FP

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence Send to blast

MDDHGFNPQN SSIFGNMDYD FMEQLLDDGC WLQTADGSSF LQPGPSTSRS FSFPSYRVPS  60
TLTYTPHEES ERWSSLPNIP KEEQVSDSQY EDEQSIVPVT RLQNQPLSFT WEGDEINRIL  120
WIEPKANTGP STTVKDRLML AVSQLKELNK NRDVLIQIWV PVKKGLTSFL TTVAQPYFLQ  180
PNSASLLQYR DVSERYEFLA DEDSKQAFGL PGRVFLGKVP EWTPDVRFFK QDEYPRSKFA  240
HQFDVRGSIA LPVFEKGSGD CLGVVEIIMT TEKFNYRPEI ESVCQALENV HLRSSEILYS  300
SQEQVSQATL VFLTLFIFCS LLFHWQKNRH IVLSLQPGKG SFEAVKPEIL NVLKTVSDAH  360
DLPLAQTWAS CLQQGKGGCW ISDNQNALCV STIDSACYVR DQHVLDFHTA CSEHHLLRGR  420
GGIIGKAFDT NQLCFATDVT EFSKADYPLS HHAKMFGLRG AVAIRLQSIY HDSNEYVLEF  480
FLPTNLQEGG LGVHGRIWQT LTMAVQQNCH SLKFITVSNY MLPTLFSEKQ TPENETKEET  540
SSWVSHIVEP RRKGKEVASL DFGEDEPGKE FQFSTNWSNS EPELQLGQVF SDSGNVKRSS  600
KSDGISGVSS GGRFPLGCRK SGEKRRTKAQ KTISLQVLRQ YFAGSLKDAA KNIGVCPTTL  660
KRICRQHGIA RWPSRKIKKV GHSLKKLQLV IDSVQGTDGS IQLSSFYTKF PELNSSNTQL  720
TDTQAPLFNL ADQSKQQPTT QAEGSIFSSG PTTSNSASTS SSQTSTSSQC FPSGSKMSSP  780
ITTDDISGSL KRARSEAELQ ILPTKEHNKI LERTHSSKAQ IDHRPPFETI PDFPIPKSLP  840
LRDAGVFKAK ATFGEEKVRF TVLPNMGFQR FQQEIATRFN LVDLSMIGIK YLDDDHEWVL  900
LTCDADLEEC IDIHRSSGSR TIRLTLSRIT SSGGFTRSKG FP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021774353.1	0.0	protein NLP2-like
Refseq	XP_021774357.1	0.0	protein NLP2-like
Refseq	XP_021774361.1	0.0	protein NLP2-like
Refseq	XP_021774368.1	0.0	protein NLP2-like
TrEMBL	A0A0K9QYB0	0.0	A0A0K9QYB0_SPIOL; Uncharacterized protein
STRING	XP_010690230.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein