PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca47086.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CO-like
Protein Properties Length: 324aa    MW: 34677.7 Da    PI: 6.6891
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca47086.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.7e-071451540
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg..Htvv 40
                 C++++   + l+C+ +  +lC  C  ++H    H v+
  Dca47086.1 14 GCDNCHAATALLYCRADAAFLCGGCDAKIHVAncHGVI 51
                5******99*********************55689886 PP
2zf-B_box25.13.7e-0858102341
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                  ++C+ +e+ ++   C+ +  +lC +C   +H+       H++ p
  Dca47086.1  58 VWMCEVCEQAPAAVACKADAAMLCTSCDHDIHSAnplarrHERAP 102
                 689*****************************6578888888766 PP
3CCT69.87.1e-24247289143
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                 R+a++lRY+eK+k+RkFeK+irY+sRKa+Ae+RpRvKGrFvk+
  Dca47086.1 247 RAARVLRYREKKKNRKFEKTIRYASRKAYAETRPRVKGRFVKR 289
                 99***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.0581053IPR000315B-box-type zinc finger
SMARTSM003361.0E-51053IPR000315B-box-type zinc finger
CDDcd000218.21E-71560No hitNo description
SMARTSM003368.3E-1256103IPR000315B-box-type zinc finger
PROSITE profilePS5011910.49556103IPR000315B-box-type zinc finger
PfamPF006432.3E-658102IPR000315B-box-type zinc finger
PfamPF062033.8E-18247289IPR010402CCT domain
PROSITE profilePS5101716.559247289IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MKGLLSGWGL SARGCDNCHA ATALLYCRAD AAFLCGGCDA KIHVANCHGV IAVRHERVWM  60
CEVCEQAPAA VACKADAAML CTSCDHDIHS ANPLARRHER APVVPFVDSV VDAAGRTSSA  120
AAASTFLNPN HTNASAAVAA AVPAPVKFSD NDDDAEAEAW LIPNPNSSFL YSESNLLDFN  180
YSVNKNDNQQ FQLFSSFNFS AQNSVSSSEI GVVPEANANS TAEVSYNICN SVTSSAAVDG  240
GAPALDRAAR VLRYREKKKN RKFEKTIRYA SRKAYAETRP RVKGRFVKRT GNNETSEIGQ  300
MFGSGDDCGF DFGLDQGYGV VPTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856630.12e-97zinc finger protein CONSTANS-LIKE 3-like
TrEMBLA0A0K9QX535e-96A0A0K9QX53_SPIOL; Uncharacterized protein
STRINGVIT_11s0052g01800.t011e-87(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.16e-62CONSTANS-like 3