PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46873.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 440aa    MW: 49366.2 Da    PI: 5.3065
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46873.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.97.2e-13111136227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 + e C+f++rtG Ck+G  CkF+H+p
  Dca46873.1 111 GVEDCSFYMRTGLCKFGVYCKFNHPP 136
                 689*********************97 PP
2zf-CCCH23.21.2e-07175195626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C++f r G Ck Gd CkF+H 
  Dca46873.1 175 CKYFERPGGCKWGDACKFNHN 195
                 ********************7 PP
3zf-CCCH38.51.9e-12214238226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++r+G Ck+G++C+F+H+
  Dca46873.1 214 GEKECPYYMRNGSCKFGSSCRFNHP 238
                 7899********************9 PP
4zf-CCCH29.81.1e-09341367127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+ff++tG Cky + CkF+H++
  Dca46873.1 341 PGQPECSFFLKTGDCKYKSACKFHHPR 367
                 5789*********************96 PP
5zf-CCCH37.44.1e-12388412226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++r+G+CkyG++Ck+ H+
  Dca46873.1 388 GESICSYYSRYGICKYGPSCKYDHP 412
                 7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-6109136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.408109137IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10111136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5112135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.371169197IPR000571Zinc finger, CCCH-type
SMARTSM003561.2171196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6173204IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5174195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4175196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.436212240IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6212239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6214239IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10214238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-5218237IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08340368IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-7342367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5344370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4346370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6385412IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6386413IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.399386414IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9388412IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4391411IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MDQITTQNSP PSPISPSISI QNDLAALSLS PETNNSAALI VPEETETQQI HYHDDDDDDD  60
DDDVDDDESV EENGEKKEEF DDHNHNDDVD DNYVVVVDDD RKRTRFPVRD GVEDCSFYMR  120
TGLCKFGVYC KFNHPPLTKF PQNAKVKGKE DSCDIVAENV REKNDLVEKG ARYDCKYFER  180
PGGCKWGDAC KFNHNKKTAT TSELNFMGLP VRPGEKECPY YMRNGSCKFG SSCRFNHPDP  240
ASVGGFDSLS SYSNGGTISS PNASQSTRKP WSSPSAMNEN PAYLPLMYPP TQQHVPPRPE  300
WTGYQAPVYP PRNMHTATTY RNRPPSHQQQ HNFVDEFPER PGQPECSFFL KTGDCKYKSA  360
CKFHHPRNDS KNSSSFSLSE LGLPLRPGES ICSYYSRYGI CKYGPSCKYD HPVNYAPSAV  420
DMASSFGHSM INNHAMAAGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021762041.11e-154zinc finger CCCH domain-containing protein 43-like
RefseqXP_021762042.11e-154zinc finger CCCH domain-containing protein 43-like
TrEMBLA0A0J8B6J51e-143A0A0J8B6J5_BETVU; Uncharacterized protein
STRINGXP_010667394.11e-144(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-95C3H family protein