PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca46512.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Dof

Protein Properties

Length: 280aa MW: 31109.1 Da PI: 4.4042

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca46512.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.5	4.6e-36	30	88	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 a +cprC s+ntkfCyynnyslsqPr+fCk+CrryWt+GG+lr vPvGgg+rk+++s+ Dca46512.1 30 PAPNCPRCASSNTKFCYYNNYSLSQPRFFCKGCRRYWTRGGSLRSVPVGGGCRKSRRSR 88 5679***************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	16	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-31	32	86	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.866	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MMETSSDQLF QCPPVPSLMM DRRWRANVDP APNCPRCASS NTKFCYYNNY SLSQPRFFCK 60 GCRRYWTRGG SLRSVPVGGG CRKSRRSRSA KSSSSGSSVV GTSPVTSSDC GRESAGADID 120 MAAVFAKYLN HDQRVFGQEI NEATNNTTST TSSDASHDSL TSSSCGLENV FESHMFADDY 180 LDPESQLIKP LAPDQAQFQE KEAAQGYINP ELASFNDIIE DVFWSEDSNM SNLTWQPIAQ 240 SQEFDSALLP VDQYDVSTDL VSTDNWNYFD NSGFEVFSRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021760968.1	1e-109	dof zinc finger protein DOF1.2-like
TrEMBL	A0A0K9RZP9	3e-97	A0A0K9RZP9_SPIOL; Uncharacterized protein
STRING	XP_010680114.1	1e-97	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	2e-32	Dof family protein