PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46288.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CO-like
Protein Properties Length: 482aa    MW: 54073.8 Da    PI: 5.6046
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46288.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.3e-072063340
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                +r C+ + +k+++++C  ++ +lC++C  + H+       H++v
  Dca46288.1 20 ARACDCCVRKRARWYCAADDAFLCQSCDGSVHSAnplarrHERV 63
                578*****************************657888888876 PP
2CCT68.12.3e-23421464144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Dca46288.1 421 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 464
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.0E-81865IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5371865IPR000315B-box-type zinc finger
PfamPF006433.0E-62063IPR000315B-box-type zinc finger
CDDcd000212.55E-82165No hitNo description
PfamPF062036.6E-18421463IPR010402CCT domain
PROSITE profilePS5101716.083421463IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MTSNSSHSNN MAMAMSGKTA RACDCCVRKR ARWYCAADDA FLCQSCDGSV HSANPLARRH  60
ERVRLKSASL KHSSDDNLPT WHRGLTRKPR TPRQGKNSSK PFTTNPRNPA STGLQNPTHI  120
VPDLGMEEAT SFSSSHGEDE EQLLFRVPEY DPFMTEFCTS RANTPIIDVK NDHQFMIKLP  180
SDLELEEFAA DVETLLGKGL DDESFGIEEL GLLDHHSPNN FNNINNSSIN IDDNDDDDDE  240
KEHGVVEFSK VVKEENVLGG GELIKKCEIE IESDDIGFRV PFDLSFDYDF PTSCEDLDGH  300
GQAVAVDGSS GVQEASKDEL DMCKIEGIND KYNDEDSNQE SNNKVLMNDN NTRKILLRLD  360
YEAITEAWAS HGSPWMNGQR PDIGLDDSWP HCLGGSGTGA HHTLYGDTQV IGNRVAGDGG  420
REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF VKRSSFAPNN NNTAFHLISK  480
RL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431447RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021723814.11e-149zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A0K9QYU21e-144A0A0K9QYU2_SPIOL; Uncharacterized protein
STRINGXP_010667660.11e-145(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.17e-90B-box type zinc finger protein with CCT domain