PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca46021.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRAS
Protein Properties Length: 449aa    MW: 50185.7 Da    PI: 6.1466
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca46021.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS469.71.6e-143464461374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA++v++g+l +a+ +L+++s+la+pdgd+mqR+aayf+e L++r+++s+++ly+al++++ +    s+e+ a+klf+ev+P+lk+++++aN
  Dca46021.1  46 LIHLLLTCANHVATGSLDNANLALEQISHLATPDGDTMQRIAAYFAESLSERVLKSWPGLYRALQCTRMP--VLSDEIVARKLFFEVFPFLKLAFVVAN 142
                 689*****************************************************************99..69************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 q I ea+ege++vHiiD+++s+++QW+aL+qaL++Rpegpp+lRiTgv++    +k  le++++rL++ Ae+l++pf+fn++v+++le+l++e+Lrvk+
  Dca46021.1 143 QSIIEAMEGEKMVHIIDLNASEPAQWIALIQALSARPEGPPHLRITGVHQ----QKAVLEQVAHRLTEEAEKLDLPFQFNPVVVSKLENLDIEKLRVKT 237
                 **************************************************....9******************************************** PP

        GRAS 199 gEalaVnlvlqlhrll................................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                 gEala+++vlqlh+ll                                 +svs + + d +L+++++lsPk++v++eq+++hn++ ++er++eal+yy+
  Dca46021.1 238 GEALAISSVLQLHTLLanedvslrsipgllnkdgtnrhspsndsasssPQSVSGSPKMDGFLNALWGLSPKIMVIAEQDSNHNGPALMERLSEALYYYA 336
                 *******************************************998775566666689***************************************** PP

        GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll.rkvksdgyrveeesgslvlgWk 363
                 alfd+le+ lpr s er+kvE+++lg+ei+n++aceg +rrerhe+l  W +rl++aGF+ vpls+  + qa++ll + ++sdgyr+ ee+g+lv++W+
  Dca46021.1 337 ALFDCLESALPRSSMERRKVEKMVLGEEIKNIIACEGGDRRERHEKLDIWIQRLDMAGFGGVPLSYIGMLQARRLLvQGCGSDGYRIREENGCLVICWQ 435
                 ************************************************************************976527888****************** PP

        GRAS 364 drpLvsvSaWr 374
                 drpL++vS Wr
  Dca46021.1 436 DRPLYFVSTWR 446
                 **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.38420425IPR005202Transcription factor GRAS
PfamPF035145.7E-14146446IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MGPMLQDDGS SVTSSPLQFF SMMSPNLGST YPWLRELKPE ERGLYLIHLL LTCANHVATG  60
SLDNANLALE QISHLATPDG DTMQRIAAYF AESLSERVLK SWPGLYRALQ CTRMPVLSDE  120
IVARKLFFEV FPFLKLAFVV ANQSIIEAME GEKMVHIIDL NASEPAQWIA LIQALSARPE  180
GPPHLRITGV HQQKAVLEQV AHRLTEEAEK LDLPFQFNPV VVSKLENLDI EKLRVKTGEA  240
LAISSVLQLH TLLANEDVSL RSIPGLLNKD GTNRHSPSND SASSSPQSVS GSPKMDGFLN  300
ALWGLSPKIM VIAEQDSNHN GPALMERLSE ALYYYAALFD CLESALPRSS MERRKVEKMV  360
LGEEIKNIIA CEGGDRRERH EKLDIWIQRL DMAGFGGVPL SYIGMLQARR LLVQGCGSDG  420
YRIREENGCL VICWQDRPLY FVSTWRCRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-71344486380Protein SCARECROW
5b3h_D9e-71344486380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673719.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0K9RSV50.0A0A0K9RSV5_SPIOL; Uncharacterized protein
STRINGXP_010673719.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]