PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca45839.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | C3H | ||||||||
Protein Properties | Length: 515aa MW: 57866 Da PI: 4.9575 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.4 | 3.8e-11 | 178 | 201 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C ++ +tG+Ck+G +C+F+H+ Dca45839.1 178 VVDCTYYTKTGICKFGKNCRFNHP 201 689********************9 PP | |||||||
2 | zf-CCCH | 32.9 | 1.1e-10 | 230 | 251 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++ G+CkyGd C+++H+ Dca45839.1 230 ECKYYQTAGWCKYGDACRYNHS 251 6********************7 PP | |||||||
3 | zf-CCCH | 29.7 | 1.1e-09 | 275 | 297 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C ++++ G C yG++C+F+H++ Dca45839.1 275 ECAYYLQHGSCAYGASCRFNHPE 297 7********************96 PP | |||||||
4 | zf-CCCH | 32.8 | 1.2e-10 | 418 | 443 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++tG+Ck+ + C+++H+ Dca45839.1 418 PGQPDCNFFMKTGYCKFRSACRYNHP 443 5789*********************8 PP | |||||||
5 | zf-CCCH | 27.9 | 4e-09 | 491 | 513 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr++ + G C+yG +C F+H+ Dca45839.1 491 KLCRNYEQHGMCRYGRNCLFNHP 513 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.685 | 175 | 203 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 176 | 202 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 178 | 201 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-5 | 180 | 202 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 181 | 200 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.699 | 225 | 253 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-4 | 226 | 252 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 230 | 254 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-8 | 230 | 251 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 231 | 252 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.971 | 270 | 298 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.5E-4 | 270 | 297 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-6 | 272 | 298 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-7 | 275 | 297 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 276 | 296 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.1E-5 | 417 | 444 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.342 | 417 | 445 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 419 | 443 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 422 | 446 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 487 | 514 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.957 | 487 | 515 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 489 | 513 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-6 | 490 | 513 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-6 | 491 | 512 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MATCEEESSA SFESRNAIIM DADNDVEVIK VMVNGDVSVH GDGDECCRTY VVVEEDGVVE 60 QVDKLELQSN CSNGSKIEEE KREESIECND DNDVADIKVT VNGDVSCHAD GDECRTYVVV 120 EEDGAVEQQL ERLELQSNCS NGSKIEEEKR EEHVECNDDN NVAENKAKSR AYSLRPYVVD 180 CTYYTKTGIC KFGKNCRFNH PLWRAFKPGG DKEKTCDESI ESVDDATKIE CKYYQTAGWC 240 KYGDACRYNH SARKIEKEYL QLNFLGLPIR PTAQECAYYL QHGSCAYGAS CRFNHPEPSA 300 VNEHDKSGDS LGNDNFVEPG VNSSRNCRGV SLQSFGGLQQ HASMSHNDID LRNGSNDMMS 360 SYHQRLPQTP ETDASQVISP SANEFLLPHQ TVSSISERVA PVSHDENPLE FDEFPVRPGQ 420 PDCNFFMKTG YCKFRSACRY NHPSSQISKQ SKPPPILPSQ LLNGMYSTRH KNQQMHRALS 480 EQGLPLRPGA KLCRNYEQHG MCRYGRNCLF NHPVV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 3e-61 | C3H family protein |