PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca45838.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C3H

Protein Properties

Length: 539aa MW: 59616.3 Da PI: 7.9673

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca45838.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.7e-07	144	166	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+ + +tGtCk+G +C+ +H+ Dca45838.1 144 EDCPLYTKTGTCKFGQKCRHNHP 166 89*****************9998 PP
2	zf-CCCH	29.8	1e-09	194	216	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++ G+C +G +C+F+H++ Dca45838.1 194 ECKYYLQHGYCAFGTNCRFNHPE 216 7********************96 PP
3	zf-CCCH	19.6	1.6e-06	340	365	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f ++G Cky ++C+++H+ Dca45838.1 340 PRRPDCELFVKNGNCKYQSSCRYNHP 365 5799*********************9 PP
4	zf-CCCH	20.5	8.4e-07	429	453	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+ +++tG+Ck + C++ H++ Dca45838.1 429 HPQCKSYMKTGQCKLKSACQYDHPR 453 578********************96 PP
5	zf-CCCH	26.5	1.1e-08	472	496	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +lCr + + G C+yG +C+F+H+ Dca45838.1 472 GVKLCRKYKQHGKCNYGHNCRFNHP 496 789*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.868	140	168	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.04	140	167	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-4	144	166	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.225	189	217	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.1E-5	189	216	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.71E-6	194	217	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.7E-7	194	216	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	195	215	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.732	339	367	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0048	339	366	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-4	341	365	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.667	426	454	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.16	426	453	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-4	429	453	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0031	470	497	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.831	470	498	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-6	472	496	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.15E-7	472	500	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-7	474	498	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MESSGMKLGW GEYLRSVIFK KSENKTGTLE EESGALFESR NAINRDARNG VDVMVEEVNV 60 NVSVNVNGDV DHVKDLGREE VARVERLERL ELQNNHFIAS KIEEDQRVEH GECNDSGNDD 120 GDGNGSGNGN EVKNRVYPLR PYAEDCPLYT KTGTCKFGQK CRHNHPLRRG SQSVGNKQSN 180 DDGAEKIGSK LAQECKYYLQ HGYCAFGTNC RFNHPEPSAV KEHVSGDPLG NGNSVKSGIN 240 SSRNCSGVPL QSFGGPSQGT SVPPNDSTVR KVSSYVLEMS SDHQTMPEPP RLNQSEVISS 300 SPANKFPHPR RVVNNVSKRV APPVSHCETP MQTKELSEQP RRPDCELFVK NGNCKYQSSC 360 RYNHPTSQKL KLSPPVSSND HSTPPTMLPA QASWPLNSNS KYMSSDGMSS THHQNPQMRN 420 IEFPERAGHP QCKSYMKTGQ CKLKSACQYD HPRTPASPYT ALNEKGLPLR PGVKLCRKYK 480 QHGKCNYGHN CRFNHPNDQL PDVSADVQSP SLTNVPPACS LEPPVAVTVD SVWNDGWVM

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MESSGMKLGW GEYLRSVIFK KSENKTGTLE EESGALFESR NAINRDARNG VDVMVEEVNV  60
NVSVNVNGDV DHVKDLGREE VARVERLERL ELQNNHFIAS KIEEDQRVEH GECNDSGNDD  120
GDGNGSGNGN EVKNRVYPLR PYAEDCPLYT KTGTCKFGQK CRHNHPLRRG SQSVGNKQSN  180
DDGAEKIGSK LAQECKYYLQ HGYCAFGTNC RFNHPEPSAV KEHVSGDPLG NGNSVKSGIN  240
SSRNCSGVPL QSFGGPSQGT SVPPNDSTVR KVSSYVLEMS SDHQTMPEPP RLNQSEVISS  300
SPANKFPHPR RVVNNVSKRV APPVSHCETP MQTKELSEQP RRPDCELFVK NGNCKYQSSC  360
RYNHPTSQKL KLSPPVSSND HSTPPTMLPA QASWPLNSNS KYMSSDGMSS THHQNPQMRN  420
IEFPERAGHP QCKSYMKTGQ CKLKSACQYD HPRTPASPYT ALNEKGLPLR PGVKLCRKYK  480
QHGKCNYGHN CRFNHPNDQL PDVSADVQSP SLTNVPPACS LEPPVAVTVD SVWNDGWVM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-32	C3H family protein