PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca45838.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 539aa    MW: 59616.3 Da    PI: 7.9673
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca45838.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.7e-07144166426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 e C+ + +tGtCk+G +C+ +H+
  Dca45838.1 144 EDCPLYTKTGTCKFGQKCRHNHP 166
                 89*****************9998 PP

2zf-CCCH29.81e-09194216527
                 --SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                 +C+++++ G+C +G +C+F+H++
  Dca45838.1 194 ECKYYLQHGYCAFGTNCRFNHPE 216
                 7********************96 PP

3zf-CCCH19.61.6e-06340365126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ++++ C  f ++G Cky ++C+++H+
  Dca45838.1 340 PRRPDCELFVKNGNCKYQSSCRYNHP 365
                 5799*********************9 PP

4zf-CCCH20.58.4e-07429453327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C+ +++tG+Ck  + C++ H++
  Dca45838.1 429 HPQCKSYMKTGQCKLKSACQYDHPR 453
                 578********************96 PP

5zf-CCCH26.51.1e-08472496226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 + +lCr + + G C+yG +C+F+H+
  Dca45838.1 472 GVKLCRKYKQHGKCNYGHNCRFNHP 496
                 789*********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.868140168IPR000571Zinc finger, CCCH-type
SMARTSM003560.04140167IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4144166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225189217IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5189216IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6194217IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-7194216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4195215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732339367IPR000571Zinc finger, CCCH-type
SMARTSM003560.0048339366IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4341365IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.667426454IPR000571Zinc finger, CCCH-type
SMARTSM003560.16426453IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4429453IPR000571Zinc finger, CCCH-type
SMARTSM003560.0031470497IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831470498IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-6472496IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-7472500IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-7474498IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MESSGMKLGW GEYLRSVIFK KSENKTGTLE EESGALFESR NAINRDARNG VDVMVEEVNV  60
NVSVNVNGDV DHVKDLGREE VARVERLERL ELQNNHFIAS KIEEDQRVEH GECNDSGNDD  120
GDGNGSGNGN EVKNRVYPLR PYAEDCPLYT KTGTCKFGQK CRHNHPLRRG SQSVGNKQSN  180
DDGAEKIGSK LAQECKYYLQ HGYCAFGTNC RFNHPEPSAV KEHVSGDPLG NGNSVKSGIN  240
SSRNCSGVPL QSFGGPSQGT SVPPNDSTVR KVSSYVLEMS SDHQTMPEPP RLNQSEVISS  300
SPANKFPHPR RVVNNVSKRV APPVSHCETP MQTKELSEQP RRPDCELFVK NGNCKYQSSC  360
RYNHPTSQKL KLSPPVSSND HSTPPTMLPA QASWPLNSNS KYMSSDGMSS THHQNPQMRN  420
IEFPERAGHP QCKSYMKTGQ CKLKSACQYD HPRTPASPYT ALNEKGLPLR PGVKLCRKYK  480
QHGKCNYGHN CRFNHPNDQL PDVSADVQSP SLTNVPPACS LEPPVAVTVD SVWNDGWVM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-32C3H family protein