PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca4574.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HSF
Protein Properties Length: 425aa    MW: 48910.4 Da    PI: 7.2146
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca4574.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.67.3e-37441352102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws++g+sfvv+d+++fa+++Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll++ik
     Dca4574.1  44 FLTKTYDMVDDSTTNHIVSWSREGHSFVVWDPHSFATHLLPRHFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEVFLRGQKQLLKNIK 131
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
     Dca4574.1 132 RRKN 135
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.04E-3640133IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.8E-4040133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6140133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3244133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MNPLYPVKEE YHDPSPSSFP GEGSMVFPAP QPMEGLNEVG PPPFLTKTYD MVDDSTTNHI  60
VSWSREGHSF VVWDPHSFAT HLLPRHFKHN NFSSFVRQLN TYGFRKIDPD RWEFANEVFL  120
RGQKQLLKNI KRRKNPSQTF PPQQGIDPCV EVGRFGVDGE VDRLRRDKQV LMMELVKLRQ  180
QQQNTRDYLQ AMEQRLQATE VKQKHMMNFL AKAMQNPAFI QQLVKQKDKR KELEETLSKK  240
RRRPIEQAQK GHLFSGESSG QVKVEPLEFG GGGSYRFNHG GVSELEALAR EMQGYGKVEC  300
DLGEDESGGL DQFDGKESDL DDDFWEDLLN ERFKVPGEPS GEDHEEHELQ ANCSNFESNV  360
ELKLKFEAKI RSDDQVGRVK LHQKKSTRLR PCGSFSVKIK SYMLHIMLIL SVVFVCDLAR  420
KAKIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-252313310129Heat shock factor protein 1
5d5v_B2e-252313310129Heat shock factor protein 1
5d5v_D2e-252313310129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132LKNIKRR
2228242KRKELEETLSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021770292.11e-174heat stress transcription factor A-2c-like
RefseqXP_021770293.11e-174heat stress transcription factor A-2c-like
SwissprotQ9LUH81e-115HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A068U6A91e-152A0A068U6A9_COFCA; Uncharacterized protein
STRINGXP_010679125.11e-167(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-118heat shock transcription factor A6B