PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca44909.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 444aa    MW: 46825.7 Da    PI: 8.6296
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca44909.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-111642127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++ C +f+r G+C yGdrC+F+H++
  Dca44909.1 16 PGEPDCIYFLRRGFCGYGDRCRFNHPR 42
                5789*********************96 PP
2zf-CCCH39.11.3e-126792227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                ++++C++++rtG Ck+G++Ck++H++
  Dca44909.1 67 GQPICQYYMRTGSCKFGSTCKYHHPR 92
                689*********************96 PP
3zf-CCCH38.61.8e-12113138227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++++tG+Ck+G +CkF+H++
  Dca44909.1 113 GEKECSYYMKTGQCKFGTTCKFHHPQ 138
                 7899********************97 PP
4zf-CCCH37.15.4e-12274298226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C+++++tG+Ck+G++Ck++H+
  Dca44909.1 274 GQPECQYYLKTGECKFGSSCKYHHP 298
                 789*********************8 PP
5zf-CCCH36.39.4e-12319345127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++t+ C+++a+ G CkyG+ CkF H++
  Dca44909.1 319 PGTPTCSYYAAHGVCKYGPACKFDHPM 345
                 68***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-61542IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1781543IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-91742IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-62045IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-62143IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-76592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.1836593IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-106792IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-66893IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-57092IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6111139IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-6111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131111139IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9113138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4117137IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-6272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873272300IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9274298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6276300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4278299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183318346IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6318345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6318348IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8319345IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4323343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MWQVRLGETT SYPERPGEPD CIYFLRRGFC GYGDRCRFNH PRDRLSPSSA VGGVVKSGGV  60
DLPERSGQPI CQYYMRTGSC KFGSTCKYHH PRQGASSDSP FGLNIYGYPM RPGEKECSYY  120
MKTGQCKFGT TCKFHHPQPA NVPVAMPAAI PPSPVPASVS YPSPSPAPQP YGVVSGNWPL  180
VRPSLMPGSY IQGPYGPMLL PPGVVPIPSW APYPAPSPLT TPATPPTVGV GQIYGLTQLS  240
PSAPAYTGAY QALPSTVGPS STILKEHSFP QRQGQPECQY YLKTGECKFG SSCKYHHPAE  300
WVAPESSSAL SPMGLPLRPG TPTCSYYAAH GVCKYGPACK FDHPMGTLSY SPSTSSLSDM  360
PVAPYPVGSL TGTLAASSSS SDLRAESNPG SHKEPGPTST SSLSMSTGSG GSVSSKSGSI  420
SQSSAQPSTQ KPATSVTGTE TTSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666382.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_010666383.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X2
SwissprotQ84W911e-144C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0J8B4L20.0A0A0J8B4L2_BETVU; Uncharacterized protein
TrEMBLA0A0J8DZ340.0A0A0J8DZ34_BETVU; Uncharacterized protein
STRINGXP_010666382.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-115C3H family protein