PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca44755.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TALE
Protein Properties Length: 718aa    MW: 77992.2 Da    PI: 6.489
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca44755.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-095045421854
                 HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 lFe   ++yps +++  LA+++gL+ +qV++WF N R +
  Dca44755.1 504 LFEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 542
                 5675569******************************88 PP
2BELL112.62.1e-36365436172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 +r e+q++k+kLl +l+e d+rY++y+eq+q+v++sF+ v+g+g a pYt+lA+ka+SrhFrcLkda+  q+
  Dca44755.1 365 DRIEHQRRKVKLLAMLDEGDRRYNHYCEQMQMVVNSFDLVMGYGGAIPYTALAQKAMSRHFRCLKDAVHAQL 436
                 589*****************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-72297434IPR006563POX domain
PfamPF075265.7E-48302432IPR006563POX domain
PROSITE profilePS5007112.94483546IPR001356Homeobox domain
SMARTSM003891.6E-10486550IPR001356Homeobox domain
CDDcd000864.87E-14486547No hitNo description
SuperFamilySSF466891.15E-17487553IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-29489552IPR009057Homeodomain-like
PfamPF059203.6E-18503542IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MSQEYNHHHH HHHHGHRHGR GGGGGGGNNN NNNEEEEEAI FAFPNGFVDR STEDDPSTTT  60
DDPSSVAGLN PVVYESAGML SEMFNFGGSN PGVANPSVGG GIGTGPHEWY GDHQQHHQQQ  120
HHHMEGGGIN AHNSAAAMQL FLTNAPPRSP SPPPPPPQPS IDGYHSIGNN NNNPNFWGHH  180
HNIVSNNNPG ELGGIIEGQG LSLSLSSSLQ HLEAAKHAEG NQIMFFNHHL HQQDSNSGVV  240
TTNAASSSSP THFFKNLTSS SNVPGPGPQA HLGGYAGPST SGLGYGPGPG PVSGSSMGVV  300
NVLRNSKYAK PAQELLEEFC SVGRGQLNKP KLGRQNSATT SGGGGGVAGS SSSVSKEPPQ  360
LSPADRIEHQ RRKVKLLAML DEGDRRYNHY CEQMQMVVNS FDLVMGYGGA IPYTALAQKA  420
MSRHFRCLKD AVHAQLKHSC ELLGEKDPTA SSGLTKGETP RLKMLEQSLR HQRAFHQMGM  480
MDQEAWRPQR GFPERSVNIL RAWLFEHFLH PYPSDADKHL LARQTGLSRN QVSNWFINAR  540
VRLWKPMVEE MYQQEAKDRL DHHDHDNDHD HDINPDDNDD EVKSENTTNN NNNNNNSSFP  600
TTQQQPPSAI AQNPIANDTV DPTPPDSDTS RQLQFNQQPQ SLVRHAHVSG LPSTSVVAHQ  660
GFHPEEFPDD DDGVGPATMI RFGSAAAPGD VSLTLGLRHA GNAPDKNSAF SVRDFEGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-17492550563Homeobox protein Meis2
4xrm_B2e-17492550563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680937.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_021758084.10.0BEL1-like homeodomain protein 4
RefseqXP_021758092.10.0BEL1-like homeodomain protein 4
TrEMBLA0A067KJ170.0A0A067KJ17_JATCU; Uncharacterized protein
STRINGXP_010680937.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-138BEL1-like homeodomain 4