PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca44480.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 306aa    MW: 34457.4 Da    PI: 6.3051
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca44480.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-151360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++lv+ ++ +G  +W+++++  g+ R++k c++rw +yl
       Dca44480.1 13 RGLWSPEEDDKLVKHITTHGHVSWSSVPKLAGLQRCGKRCRLRWINYL 60
                     788*****************99************************97 PP
2Myb_DNA-binding54.82.2e-1766109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+  +v++++ lG++ W+ Ia++++ gRt++++k++w++
       Dca44480.1  66 RGSFTEEEERTIVEVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-23462IPR009057Homeodomain-like
PROSITE profilePS5129416.43860IPR017930Myb domain
SuperFamilySSF466898.61E-2810107IPR009057Homeodomain-like
SMARTSM007177.4E-111262IPR001005SANT/Myb domain
PfamPF002493.7E-131360IPR001005SANT/Myb domain
CDDcd001671.97E-91660No hitNo description
PROSITE profilePS5129426.99561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2563115IPR009057Homeodomain-like
SMARTSM007173.2E-1665113IPR001005SANT/Myb domain
PfamPF002494.7E-1666109IPR001005SANT/Myb domain
CDDcd001671.88E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DDKLVKHITT HGHVSWSSVP KLAGLQRCGK RCRLRWINYL  60
RPDLRRGSFT EEEERTIVEV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLAQGL  120
DPNTHNLLPQ RNRKSGSSNT NNVPKISSIS TSLAFSVDQT KTRDNNKANI DQMELNNIDF  180
SSQQFDAVTG FSSECFELNS TKICNNNNYA SVNINPCDVV NIDENVLWDT TLGSIIEQQP  240
PEIAGTSDKI GTIQGNITCD QSFETTEFDT MAFDYCFDND YGATTTAFDS VYGDLSSVID  300
QVAWGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31131157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670059.11e-105PREDICTED: transcription repressor MYB6
SwissprotQ8VZQ21e-66MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A2R6QMA12e-88A0A2R6QMA1_ACTCH; Transcription factor like
STRINGXP_010670059.11e-105(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-86myb domain protein 67
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]