PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca44086.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

GRF

Protein Properties

Length: 352aa MW: 38831.5 Da PI: 8.2286

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca44086.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.8	4.3e-24	96	140	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ Dca44086.1 96 DSEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKPVES 140 689***************************************985 PP
2	QLQ	61.7	2e-21	15	50	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT+aQ+ +L++Q+++yKyL an+PvP++Ll +i+k Dca44086.1 15 LFTPAQWIELEHQAMIYKYLTANVPVPSNLLIPIRK 50 6*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	8.5E-12	14	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	23.191	15	50	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.3E-15	16	49	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.471	96	140	IPR014977	WRC domain
Pfam	PF08879	5.1E-21	98	139	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MDGEMHRWCA GIKGLFTPAQ WIELEHQAMI YKYLTANVPV PSNLLIPIRK AIQSAAFSGF 60 SIGSFPSHSY HVVLSCPRLT RDGWGSFHLG FSSNSDSEPG RCRRTDGKKW RCSREAVPDQ 120 KYCERHINRG RHRSRKPVES HIGHTASAVP TTTSVMPSMS VSMTSLVTSG GGCFTNDVTV 180 AQHQINMGLQ PTGATAASTD TIVKCLKDRQ GTSAGKQYSF EKQQISFEES SVSDFGIVSD 240 DSLLNPSQKI PCFNGKNYEF LHEYDLSQQN GNPEWVQLSM SNPTSSFPNH EKISVSSSSF 300 TREFDPFQTR LGVEVDTKRN EWIPNSTGGG PLGEVLVSNL STQLRSSRTG VL

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MDGEMHRWCA GIKGLFTPAQ WIELEHQAMI YKYLTANVPV PSNLLIPIRK AIQSAAFSGF  60
SIGSFPSHSY HVVLSCPRLT RDGWGSFHLG FSSNSDSEPG RCRRTDGKKW RCSREAVPDQ  120
KYCERHINRG RHRSRKPVES HIGHTASAVP TTTSVMPSMS VSMTSLVTSG GGCFTNDVTV  180
AQHQINMGLQ PTGATAASTD TIVKCLKDRQ GTSAGKQYSF EKQQISFEES SVSDFGIVSD  240
DSLLNPSQKI PCFNGKNYEF LHEYDLSQQN GNPEWVQLSM SNPTSSFPNH EKISVSSSSF  300
TREFDPFQTR LGVEVDTKRN EWIPNSTGGG PLGEVLVSNL STQLRSSRTG VL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021717972.1	1e-114	growth-regulating factor 1-like
TrEMBL	A0A0K9QDT8	1e-105	A0A0K9QDT8_SPIOL; Uncharacterized protein
TrEMBL	A0A0K9QFT0	1e-105	A0A0K9QFT0_SPIOL; Uncharacterized protein
STRING	XP_010679671.1	1e-107	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	8e-62	growth-regulating factor 1