PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca43861.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Nin-like

Protein Properties

Length: 1034aa MW: 112635 Da PI: 6.1925

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca43861.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93	2.2e-29	655	706	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Dca43861.1 655 AEKQISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 706 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.723	645	726	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-26	659	706	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.56E-22	932	1024	No hit	No description
Pfam	PF00564	1.2E-18	939	1020	IPR000270	PB1 domain
PROSITE profile	PS51745	23.8	939	1021	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.4E-24	939	1020	No hit	No description
SMART	SM00666	1.5E-23	939	1021	IPR000270	PB1 domain
CDD	cd06407	3.79E-35	940	1020	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence Send to blast
MSQTPPATTN TNTHPDSDTN NNNNNNNNNN NNKSCFGVGV GVGVGPTATS SRGENYYYSS 60 GSGIHHNNNN NNNNNNNNIY VNLEASSTAL MDLDFGDLDA SWSFDQITAA GGAGGGAAAT 120 ITAAPVLISN SDQPCSPLWA FSDAPHFPNS FCFSPCHPDP ISHTATHTCG VNAPLHDDDD 180 HNNNNKIPLP FTALSPPDNL DVSFLIKERM TRALRYFKEL TEQHQILAQV WAPVRSGNRY 240 VLTTSGQPFV LGPHSNGLNQ YRTVSLMYMF AVDGDSDVTL GLPGRVFNQK LPEWTPNVQY 300 YSSKEYPRVD HAKHYNVKGT LALPVFEPSG QSCVGVLELI MTSQKINYAP EVDKVCKALE 360 AVNLRSSEIL DHPNIQICNE GRQNALAEIL EVLTEVCETY KLPLAQTWIP CKHRSVLAYG 420 GGLKKSCSSF DGSCMGRVCM STTDVAYYVV DAQILGFREA CAEHHLQRGQ GVAGRAFSSH 480 GLSFCRDISQ FCKFDYPLVH YARMFRFRGS FAICLRSKHT GDDDYVLEFF LPSSITDSAG 540 QLDLLDSILA TMKEDLQNLM FASGNTLEEE RKHMEIIEVS TDYNHDAQIG SNLSIIPTSM 600 AMAMNGALSL AKDSQKQLTA EAGAMNIVAS RSHNPISPTG KKEAKKTSER KRGKAEKQIS 660 LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL TKLKRVIESV 720 QGADGTFSLT SLAQPTMPVP VGSISWPAGV NGTCHQLSPT SQPTDVPDER SEMPSYEPRT 780 NGQTCGRASS REDRVNEQNG FTSKGGSGST GTSTSHGSCH GSPGTESNPP PNGNFVQSFC 840 EQVGNSSGLM FRQNGAYSIP DALFIAHSQD TFGGMLLEDA GSSKDLRNIC SPGVEANADE 900 SPAPEAGWIN PSCPSPSSRV GTSVFGMTSR FSVRQDMKTV TIKATFREDI IRFRFSLASN 960 IVELREEVSK RLKLEVGTFE IKYLDDDHEW VLIACDSDLQ ECLDVSRSSG SDMIRLLIQD 1020 IMGNLGSSCE SSGE

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence Send to blast

MSQTPPATTN TNTHPDSDTN NNNNNNNNNN NNKSCFGVGV GVGVGPTATS SRGENYYYSS  60
GSGIHHNNNN NNNNNNNNIY VNLEASSTAL MDLDFGDLDA SWSFDQITAA GGAGGGAAAT  120
ITAAPVLISN SDQPCSPLWA FSDAPHFPNS FCFSPCHPDP ISHTATHTCG VNAPLHDDDD  180
HNNNNKIPLP FTALSPPDNL DVSFLIKERM TRALRYFKEL TEQHQILAQV WAPVRSGNRY  240
VLTTSGQPFV LGPHSNGLNQ YRTVSLMYMF AVDGDSDVTL GLPGRVFNQK LPEWTPNVQY  300
YSSKEYPRVD HAKHYNVKGT LALPVFEPSG QSCVGVLELI MTSQKINYAP EVDKVCKALE  360
AVNLRSSEIL DHPNIQICNE GRQNALAEIL EVLTEVCETY KLPLAQTWIP CKHRSVLAYG  420
GGLKKSCSSF DGSCMGRVCM STTDVAYYVV DAQILGFREA CAEHHLQRGQ GVAGRAFSSH  480
GLSFCRDISQ FCKFDYPLVH YARMFRFRGS FAICLRSKHT GDDDYVLEFF LPSSITDSAG  540
QLDLLDSILA TMKEDLQNLM FASGNTLEEE RKHMEIIEVS TDYNHDAQIG SNLSIIPTSM  600
AMAMNGALSL AKDSQKQLTA EAGAMNIVAS RSHNPISPTG KKEAKKTSER KRGKAEKQIS  660
LEVLQQYFAG SLKDAAKSLG VCPTTMKRIC RQHGISRWPS RKINKVNRSL TKLKRVIESV  720
QGADGTFSLT SLAQPTMPVP VGSISWPAGV NGTCHQLSPT SQPTDVPDER SEMPSYEPRT  780
NGQTCGRASS REDRVNEQNG FTSKGGSGST GTSTSHGSCH GSPGTESNPP PNGNFVQSFC  840
EQVGNSSGLM FRQNGAYSIP DALFIAHSQD TFGGMLLEDA GSSKDLRNIC SPGVEANADE  900
SPAPEAGWIN PSCPSPSSRV GTSVFGMTSR FSVRQDMKTV TIKATFREDI IRFRFSLASN  960
IVELREEVSK RLKLEVGTFE IKYLDDDHEW VLIACDSDLQ ECLDVSRSSG SDMIRLLIQD  1020
IMGNLGSSCE SSGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010695590.1	0.0	PREDICTED: protein NLP7
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A0J8BC07	0.0	A0A0J8BC07_BETVU; Uncharacterized protein
STRING	XP_010695590.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]