PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca43573.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | bHLH | ||||||||
Protein Properties | Length: 184aa MW: 20464.3 Da PI: 11.2051 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00013 | 86 | 105 | 11 | 30 |
HHHHHHHHHHHHHHCTSCCC CS HLH 11 rRRdriNsafeeLrellPka 30 + R+r+Ns+++eLr+ lPk Dca43573.1 86 NLRRRLNSRIQELRKDLPKK 105 67*************99996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04483 | 1.3E-15 | 125 | 183 | IPR007572 | Uncharacterised protein family Ycf20 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MVLTRGIGLL HYPTTTRALS TKISVLRLSL LKAVAKLPFI QVYGGSMFKK RKISGWSIKS 60 SADGRGLDPL ADSSDGRTRL LKTIQNLRRR LNSRIQELRK DLPKKFLFFL VGFYCATAFA 120 TVIGQTGDWD ILSAAVAVAV VEGIGALMYK LSLPSLNRAR SVIVMFNYWK AGLKLGLFLD 180 SFKY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849343.1 | 1e-76 | ycf20-like protein | ||||
TrEMBL | A0A0K9Q9H4 | 2e-75 | A0A0K9Q9H4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010692203.1 | 1e-66 | (Beta vulgaris) |