PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca43497.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

HB-PHD

Protein Properties

Length: 1057aa MW: 114275 Da PI: 4.3531

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca43497.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.2	9.9e-12	902	945	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++ +++L e F++n+yp+++++e+LA +lgLt +V WF N R Dca43497.1 902 ESATKRLYESFKENMYPDRSTKEKLAGELGLTPLRVDKWFGNAR 945 567899************************************99 PP
2	PHD	43.9	5.6e-15	562	617	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ ++++++lCdg C++ fH++Cl+++l++ee+p g w+C+ C++k Dca43497.1 562 FCAKCGSkdLPAGNDIILCDGsCDRGFHQYCLDPPLRTEEIPPGdeGWFCPACDCK 617 6999966556****55****************9999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	5.76E-15	552	620	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.3E-14	559	616	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	11.092	560	617	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	1.06E-26	562	614	No hit	No description
Pfam	PF00628	1.7E-12	562	617	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	2.3E-11	562	615	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	563	614	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	9.5E-14	872	945	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.99E-11	887	949	IPR009057	Homeodomain-like
CDD	cd00086	8.67E-12	891	945	No hit	No description
PROSITE profile	PS50071	12.163	891	951	IPR001356	Homeobox domain
SMART	SM00389	4.5E-10	893	955	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-9	902	945	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1057 aa Download sequence Send to blast
MSGGEHTNND PAQICNINEF SAGCTNERVE PYVNKEQCDF DGSKSSILVS SVEKLTGNSN 60 AVGGDGEYGS GGDITNWDVG QCFGEGLNPV QTVGDVFDIF GTSFQSSEQS GMGNNFGNYY 120 AAGQQDHGNG ISTVEMPMNG SESMVCKPGE EGGKGTHCNE KIPGSSLGVV GTGIEEPHGN 180 SCHDAATGGD EVSKRSDEMI GEEGLRTQEV ENNAFEPALV GGCKLIDEVT KQSVETVGCI 240 PTDFDQNMLS HESAAGEPSR VLNDVECVKS EMVSAGGVFP VKSDIVCESL IPEDKVVELP 300 SDPLENSSKN DHGRQDEPIN ASDVVLDDGR FAEIFEKQED EVAVSVRDNA PKEQTYAAEP 360 VGESVKGACN AGDDKKASLN EQQSLQKVSE EAHYIVQGLP ATDPSVKPFR FRNFAIAKEA 420 HKKSHCGRKL RGKDPNTPES TSNLVDTQGS SVERRGRKRT PMTMTGKSND EFSKVRKHLR 480 YLLHKIGYEQ SLLDAYSTEG WRGQSLEKLR PEKELERAKA DINRFKVKIR ELFHQLETIS 540 CEGKFPDSLY DSEGLIDSED IFCAKCGSKD LPAGNDIILC DGSCDRGFHQ YCLDPPLRTE 600 EIPPGDEGWF CPACDCKFDC IDLLNESLGV KLSIEDSWES VFPEAVAAMA GLKQDDLMGL 660 PSDDSDDNDY NPDGQDDGSK EEEKENSSGK SESEESDSSD FSSASEDLGA VCKDDQLLGL 720 PSDDSEDDDF NPDAANSNDD DDEGASSCSD FTSASEDLGA TVGNDEMPET GHPLPAVVDE 780 DLGDSLPVSS KRNIERLDYK QLFDETYGNG VSDSSDDEEW ADDDATTSET SAKREVSASK 840 NEHKLTSANS ENPSVVGPRR RGRPKRGQQV EKGSPSEPQK TPQETSSGGK RGKRPPYNKL 900 PESATKRLYE SFKENMYPDR STKEKLAGEL GLTPLRVDKW FGNARWSFHH HPSRVEACIA 960 RVVPGGGTPP TVALADANIA VPERGPGGGI PPTVSEHGGA GSSKLDKGSD EKISAPQEPS 1020 KRKADDNEVQ AHNSLEKTPE VLGRGQRKRR KSDARSG

Sequence ? help Back to Top

Protein Sequence Length: 1057 aa Download sequence Send to blast

MSGGEHTNND PAQICNINEF SAGCTNERVE PYVNKEQCDF DGSKSSILVS SVEKLTGNSN  60
AVGGDGEYGS GGDITNWDVG QCFGEGLNPV QTVGDVFDIF GTSFQSSEQS GMGNNFGNYY  120
AAGQQDHGNG ISTVEMPMNG SESMVCKPGE EGGKGTHCNE KIPGSSLGVV GTGIEEPHGN  180
SCHDAATGGD EVSKRSDEMI GEEGLRTQEV ENNAFEPALV GGCKLIDEVT KQSVETVGCI  240
PTDFDQNMLS HESAAGEPSR VLNDVECVKS EMVSAGGVFP VKSDIVCESL IPEDKVVELP  300
SDPLENSSKN DHGRQDEPIN ASDVVLDDGR FAEIFEKQED EVAVSVRDNA PKEQTYAAEP  360
VGESVKGACN AGDDKKASLN EQQSLQKVSE EAHYIVQGLP ATDPSVKPFR FRNFAIAKEA  420
HKKSHCGRKL RGKDPNTPES TSNLVDTQGS SVERRGRKRT PMTMTGKSND EFSKVRKHLR  480
YLLHKIGYEQ SLLDAYSTEG WRGQSLEKLR PEKELERAKA DINRFKVKIR ELFHQLETIS  540
CEGKFPDSLY DSEGLIDSED IFCAKCGSKD LPAGNDIILC DGSCDRGFHQ YCLDPPLRTE  600
EIPPGDEGWF CPACDCKFDC IDLLNESLGV KLSIEDSWES VFPEAVAAMA GLKQDDLMGL  660
PSDDSDDNDY NPDGQDDGSK EEEKENSSGK SESEESDSSD FSSASEDLGA VCKDDQLLGL  720
PSDDSEDDDF NPDAANSNDD DDEGASSCSD FTSASEDLGA TVGNDEMPET GHPLPAVVDE  780
DLGDSLPVSS KRNIERLDYK QLFDETYGNG VSDSSDDEEW ADDDATTSET SAKREVSASK  840
NEHKLTSANS ENPSVVGPRR RGRPKRGQQV EKGSPSEPQK TPQETSSGGK RGKRPPYNKL  900
PESATKRLYE SFKENMYPDR STKEKLAGEL GLTPLRVDKW FGNARWSFHH HPSRVEACIA  960
RVVPGGGTPP TVALADANIA VPERGPGGGI PPTVSEHGGA GSSKLDKGSD EKISAPQEPS  1020
KRKADDNEVQ AHNSLEKTPE VLGRGQRKRR KSDARSG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021733503.1	0.0	homeobox protein HAT3.1-like
Refseq	XP_021733504.1	0.0	homeobox protein HAT3.1-like
TrEMBL	A0A0K9QSK5	0.0	A0A0K9QSK5_SPIOL; Uncharacterized protein
STRING	XP_010678968.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-76	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain