PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca42769.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family E2F/DP
Protein Properties Length: 476aa    MW: 52601.2 Da    PI: 5.0664
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca42769.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP67.81.3e-21180237871
     E2F_TDP   8 lltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 llt+kf++l++++e+gi++ln+ a+ L   +v  ++RRiYD++NVLe+++liek  kn i+wkg
  Dca42769.1 180 LLTKKFINLIKRAEDGILDLNKTAEVL---EV--QKRRIYDVTNVLEGIGLIEK-LKNGIQWKG 237
                 89*************************...99..********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013725.7E-23179237IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.17E-14179238IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-21180239IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.5E-19180237IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF164214.2E-22248336IPR032198E2F transcription factor, CC-MB domain
CDDcd146601.04E-36248338No hitNo description
SuperFamilySSF1440749.68E-25250338No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSSAANNHHA PPHPSSTRHL HFSMKPPLGD YHTFSDHPPP PPPLSETLVL KTPPRKRKCD  60
KTENDAESTA LIMSPGYTEV VNSPIQTPIS GKGGKGRRAP RITKSNRSGP QTPMSNIGSP  120
GNDLTPVGPS RSDCSLGKRM YPCAVALLFD SYCLSMRRAA FRSWMYMLWL MFYVLVDTVL  180
LTKKFINLIK RAEDGILDLN KTAEVLEVQK RRIYDVTNVL EGIGLIEKLK NGIQWKGLDV  240
SRPGDVDNSV ASLQAEVENL SMEERGLDEQ IRWLFVTEDD IKAVPCFQNE TLIAVKAPHG  300
TTLEVPDPEE AVDCRHQRRY RIVLRSTMGP IDVYLVSQFE EKFEEINAAE APSSEPNSSG  360
DNKHPRAEPN NTNKTKATEL QEQETPPTCA DATVAQECSS GIMKIVPEVD SDADYWLLSD  420
ADVSISEMWG TDSAVEWNEL ETVHEDYVMV NASSPQSQNP QPANATKAAT ANTAGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A5e-171802381474PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021715678.10.0transcription factor E2FB-like
RefseqXP_021720546.10.0transcription factor E2FB-like
TrEMBLQ9FNS00.0Q9FNS0_OXYRB; Transcription factor (E2F)
STRINGXP_010685421.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-111E2F transcription factor 1