PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca42377.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Trihelix

Protein Properties

Length: 343aa MW: 38586.6 Da PI: 4.9976

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca42377.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.6	3.1e-13	29	106	2	81
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 Wt q L++ + +e + +++ + ++W+ +++++ + + r+++qC+ kwe+l +y ++ke+e+ s+++s +++ Dca42377.1 29 WTVQDMFILVNEVAAVEVDCQDALSSYQKWKIIAENCTALEVVRNANQCRRKWESLVADYNAVKEWEST--SRDKSYWSF 106 99999999************************************************************7..566667875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-10	28	120	No hit	No description
PROSITE profile	PS50090	6.574	29	85	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MGRADVCQNE ESSSGSRFTR SHLQAGPVWT VQDMFILVNE VAAVEVDCQD ALSSYQKWKI 60 IAENCTALEV VRNANQCRRK WESLVADYNA VKEWESTSRD KSYWSFECGK REEAGLPVDF 120 DKDLYKAIDE FMKATEQANT ESESDSDTEV AEEDVLTATT SVPSRSKPKR VVNRSTPHKN 180 RTVGRKPITV KEKCEKPVRT VGRKPITMKE ECEKPVHTVK DVEPIIATKL TIDVKTGPKP 240 KRAKLESTLQ QSETNERKQV PLEDDKPVPV VQDVEQILAT KVMENTELVH AILAGVDDNH 300 TVNEEIPDVK DDETAKRKAE KLIACLADLG KNLEQLCDVV KEC

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MGRADVCQNE ESSSGSRFTR SHLQAGPVWT VQDMFILVNE VAAVEVDCQD ALSSYQKWKI  60
IAENCTALEV VRNANQCRRK WESLVADYNA VKEWESTSRD KSYWSFECGK REEAGLPVDF  120
DKDLYKAIDE FMKATEQANT ESESDSDTEV AEEDVLTATT SVPSRSKPKR VVNRSTPHKN  180
RTVGRKPITV KEKCEKPVRT VGRKPITMKE ECEKPVHTVK DVEPIIATKL TIDVKTGPKP  240
KRAKLESTLQ QSETNERKQV PLEDDKPVPV VQDVEQILAT KVMENTELVH AILAGVDDNH  300
TVNEEIPDVK DDETAKRKAE KLIACLADLG KNLEQLCDVV KEC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	1e-50	sequence-specific DNA binding transcription factors