PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41959.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRF
Protein Properties Length: 398aa    MW: 43926.7 Da    PI: 8.2025
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41959.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.6e-2590134145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e+
  Dca41959.1  90 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVES 134
                 79****************************************986 PP
2QLQ58.71.8e-202357236
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                +FT +Q+q+L++Q+l+yKy+aa+ P+Pp+Ll+ ++
  Dca41959.1 23 PFTTTQWQELEHQALIYKYMAAGIPIPPDLLFSVK 57
                8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-122258IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.9E-152356IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.7752358IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.41790134IPR014977WRC domain
PfamPF088791.4E-2091133IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSATTATAAS VAALSGSNRN KFPFTTTQWQ ELEHQALIYK YMAAGIPIPP DLLFSVKRSL  60
DASLSSKLFP YQSSPLGWNP YQMGYGKKID PEPGRCRRTD GKKWRCSKEA YPDSKYCERH  120
MHRGKNRSRK PVESPLTTTN SNNNINNNNA ASVTPSLSPL SAATNSLNAA AAAVSSTNLT  180
NQSLFTKTAS NNNNNNNNSL YSSFPSSDSS YHSSNSNLLY PHTTSSYGQK DYRDRYYQGL  240
KEEVGEHAFF TESSGSSMRG FSMDESWQQL GEKQGGGGGG GGYPNYNLSS TATNQYDAST  300
NSSSRQQQQQ QQEKQCYIWG RDFNCELSMK VMEEEERSHH NLGGEKTTHH FFDEWPIRNG  360
GGSTGIGDDS SSTTQLSISI PSSAQNHHDF FLSNSRNA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666262.11e-155PREDICTED: growth-regulating factor 1
TrEMBLA0A0J8B8A11e-154A0A0J8B8A1_BETVU; Uncharacterized protein
STRINGXP_010666262.11e-155(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-59growth-regulating factor 5