PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca41900.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 442aa    MW: 49735.4 Da    PI: 4.9074
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca41900.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.47.7e-194692148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEde+l  av+++ g++Wk+Ia+ +   Rt+ qc +rwqk+l
       Dca41900.1 46 RGQWTPEEDEILRAAVQRFKGKNWKKIAESFK-DRTDVQCLHRWQKVL 92
                     89*****************************9.************986 PP
2Myb_DNA-binding67.23e-2198144148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde++v+ vk++G++ W+tIa++++ gR +kqc++rw+++l
       Dca41900.1  98 KGPWSKEEDEIIVQMVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 144
                      79******************************.*************97 PP
3Myb_DNA-binding50.35.3e-16150192145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++++G++ W+   ++++ gRt++ +k++w+
       Dca41900.1 150 KEAWTQEEELVLIHAHELYGNK-WAELTKYLP-GRTDNAIKNHWN 192
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.9184192IPR017930Myb domain
SMARTSM007174.1E-154594IPR001005SANT/Myb domain
PfamPF002491.5E-164692IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-1647102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2548109IPR009057Homeodomain-like
CDDcd001678.41E-144992No hitNo description
PROSITE profilePS5129433.81193148IPR017930Myb domain
SuperFamilySSF466891.37E-3295191IPR009057Homeodomain-like
SMARTSM007176.1E-2097146IPR001005SANT/Myb domain
PfamPF002493.7E-1998144IPR001005SANT/Myb domain
CDDcd001671.22E-17100144No hitNo description
Gene3DG3DSA:1.10.10.605.5E-28110151IPR009057Homeodomain-like
PROSITE profilePS5129420.428149199IPR017930Myb domain
SMARTSM007171.9E-14149197IPR001005SANT/Myb domain
PfamPF002493.8E-14150193IPR001005SANT/Myb domain
CDDcd001672.44E-11152192No hitNo description
Gene3DG3DSA:1.10.10.603.8E-22152199IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
METDKKAVTS LPPVPPPATV NSSNNAFPQA RPMHGRISGP TRRSTRGQWT PEEDEILRAA  60
VQRFKGKNWK KIAESFKDRT DVQCLHRWQK VLNPNLIKGP WSKEEDEIIV QMVKKYGPKK  120
WSTIAQHLPG RIGKQCRERW HNHLNPGINK EAWTQEEELV LIHAHELYGN KWAELTKYLP  180
GRTDNAIKNH WNSSVKKKLD SYKASGLLAQ FQDLTLINLQ NQSSAATALR VQQSSEDAEE  240
MSECSQVGCG SQTTSDMSNA VCQTRDDFIV SEESDQGKMP HISPTASCSE PYYPSLDDIT  300
FTISDIPCEF TCSSNYLEEE FSKVVPGTET GDFVFGAISL PMNSSTDLPS DNYFLAASVN  360
DCSKDADAVQ IQRPEEGCSE ITMTQEEVDA NIERCTSMID MEKYRDYLSF QSMYQFAETN  420
GTVALQPYND SSNPSEITSQ NK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-68481998159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-68481998159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667918.10.0PREDICTED: myb-related protein 3R-1
RefseqXP_010667925.10.0PREDICTED: myb-related protein 3R-1
SwissprotQ9S7G71e-125MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A0J8D1H60.0A0A0J8D1H6_BETVU; Uncharacterized protein
STRINGXP_010667918.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-127Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]